View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_4 (Length: 438)

Name: NF10187_low_4
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_4
NF10187_low_4
[»] chr8 (1 HSPs)
chr8 (18-428)||(43006906-43007318)
[»] chr6 (1 HSPs)
chr6 (164-242)||(27134163-27134241)
[»] chr4 (4 HSPs)
chr4 (164-234)||(47671754-47671824)
chr4 (198-240)||(23564540-23564582)
chr4 (208-240)||(8837026-8837058)
chr4 (202-238)||(55240474-55240510)
[»] chr3 (1 HSPs)
chr3 (198-242)||(50196942-50196986)
[»] chr5 (1 HSPs)
chr5 (198-240)||(33408175-33408217)
[»] chr7 (1 HSPs)
chr7 (196-240)||(33804319-33804363)


Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 43006906 - 43007318
Alignment:
Q  18 atcttatacgtttaactcatcaagaacaaggtcctaaaactcaatggagttagctgaatcaaagcatgctaggtcatcaagtagaaaatat--gtgtttg 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  43006906 atcttatacctttaactcatcaagaacaaggtcctaaaactcaatggagttagctgaatcaaagcatgctaggtcatcaagtagaaaatatatgtgtttg 43007005  T
Q  116 tagttattgaagttgtattggagtctcatgctattcatattctttgaggtataaatttgtttgaacactcttattttttaaactaacttttaggatgaga 215  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  43007006 tagttattgaagttgtattagagtctcatgctattcatattctttgaggtataaatttgtttgaacactcttattttttaaactaacttttgggataaga 43007105  T
Q  216 ttcaaaccaatttaacatggtatcaaatagagtaagaacatctgattacatattgtaatgtaggaatataacacatgactcacacttgacgtgagggtcg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43007106 ttcaaaccaatttaacatggtatcaaatagagtaagaacatctgattacatattgtaatgtaggaatatagcacatgactcacacttgacgtgagggtcg 43007205  T
Q  316 atattgaagttgtattagaatttcacatttttgtaggtttttggagtgtttgatgtatatatgcgattggacaccctcctcccctgccttttattctatc 415  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||     
T  43007206 atattgaagttgtattagaatttcacatttttttaggtttttggagtgtttgatgtatatatgcgattggacaccctcatcccctgccttttaatctatg 43007305  T
Q  416 gttgtgacctttg 428  Q
    |||||||||||||    
T  43007306 gttgtgacctttg 43007318  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 27134163 - 27134241
Alignment:
Q  164 gtataaatttgtttgaacactcttattttttaaactaacttttaggatgagattcaaaccaatttaacatggtatcaaa 242  Q
    |||||||| |||||||  ||||| ||  |||||  || |||||||||||||||||||||  ||||||||||||||||||    
T  27134163 gtataaatatgtttgactactctcatcctttaacttagcttttaggatgagattcaaactcatttaacatggtatcaaa 27134241  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 47671824 - 47671754
Alignment:
Q  164 gtataaatttgtttgaacactcttattttttaaactaacttttaggatgagattcaaaccaatttaacatg 234  Q
    |||||||| ||||||||   ||||||||||| | ||||||||| |||||||||||||||  ||||||||||    
T  47671824 gtataaatgtgtttgaatgttcttatttttttatctaacttttgggatgagattcaaactcatttaacatg 47671754  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 23564582 - 23564540
Alignment:
Q  198 ctaacttttaggatgagattcaaaccaatttaacatggtatca 240  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||    
T  23564582 ctaacttttgggatgagatccaaacctatttaacatggtatca 23564540  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 8837058 - 8837026
Alignment:
Q  208 ggatgagattcaaaccaatttaacatggtatca 240  Q
    |||||||||||||||| ||||||||||||||||    
T  8837058 ggatgagattcaaacctatttaacatggtatca 8837026  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 55240474 - 55240510
Alignment:
Q  202 cttttaggatgagattcaaaccaatttaacatggtat 238  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  55240474 cttttgggatgagattcaagccaatttaacatggtat 55240510  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 50196942 - 50196986
Alignment:
Q  198 ctaacttttaggatgagattcaaaccaatttaacatggtatcaaa 242  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||||    
T  50196942 ctaacttttgggatgagatccaaacctatttaacatggtatcaaa 50196986  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 33408217 - 33408175
Alignment:
Q  198 ctaacttttaggatgagattcaaaccaatttaacatggtatca 240  Q
    ||||||||| |||||||||||||||  ||||||||||||||||    
T  33408217 ctaacttttgggatgagattcaaactcatttaacatggtatca 33408175  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 33804363 - 33804319
Alignment:
Q  196 aactaacttttaggatgagattcaaaccaatttaacatggtatca 240  Q
    ||||||||||| ||||||||||||  || ||||||||||||||||    
T  33804363 aactaacttttgggatgagattcatgcctatttaacatggtatca 33804319  T

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