View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_45 (Length: 258)

Name: NF10187_low_45
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_45
NF10187_low_45
[»] chr3 (11 HSPs)
chr3 (26-94)||(54362015-54362083)
chr3 (26-90)||(9762770-9762834)
chr3 (25-71)||(53683921-53683967)
chr3 (37-90)||(37311639-37311692)
chr3 (38-90)||(3455892-3455944)
chr3 (43-94)||(32737827-32737878)
chr3 (51-94)||(41666924-41666967)
chr3 (24-74)||(47495847-47495897)
chr3 (26-62)||(41519618-41519654)
chr3 (166-198)||(45054765-45054797)
chr3 (37-101)||(48855573-48855637)
[»] chr6 (1 HSPs)
chr6 (26-94)||(7509747-7509815)
[»] chr4 (12 HSPs)
chr4 (26-90)||(2554180-2554244)
chr4 (24-94)||(13901997-13902066)
chr4 (26-94)||(3527864-3527932)
chr4 (24-79)||(18873533-18873588)
chr4 (39-90)||(50685590-50685641)
chr4 (26-62)||(34256103-34256139)
chr4 (26-78)||(39890819-39890871)
chr4 (26-90)||(40227657-40227721)
chr4 (21-72)||(2548971-2549022)
chr4 (27-78)||(55323048-55323099)
chr4 (21-77)||(1846140-1846196)
chr4 (26-62)||(53133450-53133486)
[»] chr2 (9 HSPs)
chr2 (26-94)||(929010-929078)
chr2 (24-78)||(43412785-43412839)
chr2 (26-78)||(34504161-34504213)
chr2 (26-80)||(3903683-3903737)
chr2 (30-68)||(12972858-12972896)
chr2 (26-68)||(44966139-44966181)
chr2 (25-94)||(2080618-2080687)
chr2 (45-94)||(37425686-37425735)
chr2 (26-78)||(34929301-34929353)
[»] chr5 (6 HSPs)
chr5 (37-90)||(29429605-29429658)
chr5 (26-72)||(30873074-30873120)
chr5 (23-90)||(36187497-36187564)
chr5 (32-87)||(36187647-36187702)
chr5 (26-90)||(29855468-29855532)
chr5 (24-68)||(14513008-14513052)
[»] chr1 (4 HSPs)
chr1 (24-93)||(31820654-31820723)
chr1 (26-59)||(28773094-28773127)
chr1 (53-90)||(49044706-49044743)
chr1 (40-88)||(29731004-29731052)
[»] chr7 (8 HSPs)
chr7 (26-94)||(32854239-32854307)
chr7 (41-90)||(48723343-48723392)
chr7 (26-89)||(33645281-33645349)
chr7 (26-77)||(48046987-48047038)
chr7 (24-90)||(17503631-17503696)
chr7 (24-90)||(17549518-17549583)
chr7 (42-80)||(48030193-48030231)
chr7 (42-91)||(33188148-33188197)
[»] chr8 (1 HSPs)
chr8 (24-65)||(14055738-14055779)


Alignment Details
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 54362015 - 54362083
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaat 94  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54362015 aaatgttaacttgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaat 54362083  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 9762834 - 9762770
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    |||||||||| |||| |  |||||||||| ||||||||||||||||||||||||||  |||||||    
T  9762834 aaatgctaacttgtgtcgataaggcacaaattaatgagtcaaaagtagaaatattttattgtaat 9762770  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 53683921 - 53683967
Alignment:
Q  25 aaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagt 71  Q
    |||||| |||| ||||||||||||||||||||||||||| |||||||    
T  53683921 aaaatgttaacttgtgcccttaaggcacaagttaatgagccaaaagt 53683967  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 37311639 - 37311692
Alignment:
Q  37 tgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    ||||||| ||||||||||||||||||| |||||||| ||||| || ||||||||    
T  37311639 tgtgcccgtaaggcacaagttaatgagacaaaagtataaataatttgttgtaat 37311692  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 3455944 - 3455892
Alignment:
Q  38 gtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||  |||||||    
T  3455944 gtgctcttaagacacaagttaatgagtcaaatgtagaaatattttcttgtaat 3455892  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 32737878 - 32737827
Alignment:
Q  43 cttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaat 94  Q
    ||||||||||||||||||||||||||| |  ||||| || ||||||||||||    
T  32737878 cttaaggcacaagttaatgagtcaaaaatgaaaataatttgttgtaatcaat 32737827  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 41666924 - 41666967
Alignment:
Q  51 acaagttaatgagtcaaaagtagaaatatttggttgtaatcaat 94  Q
    |||||||||||||||||||||| ||||||||  |||||||||||    
T  41666924 acaagttaatgagtcaaaagtaaaaatattttattgtaatcaat 41666967  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 47495897 - 47495847
Alignment:
Q  24 gaaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtaga 74  Q
    |||||||||||| ||||  ||||| |||||||||||||||||||| |||||    
T  47495897 gaaaatgctaacttgtgtgcttaaagcacaagttaatgagtcaaatgtaga 47495847  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 41519654 - 41519618
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatga 62  Q
    |||||||||| |||||||| |||||||||||||||||    
T  41519654 aaatgctaacttgtgccctcaaggcacaagttaatga 41519618  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 45054765 - 45054797
Alignment:
Q  166 gttgcttaacatgcgcccttagggcacaagtta 198  Q
    ||||||||||||| |||||||||||||||||||    
T  45054765 gttgcttaacatgtgcccttagggcacaagtta 45054797  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 48855637 - 48855573
Alignment:
Q  37 tgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaattcgtttg 101  Q
    |||| ||||||||||||||||||||||  |||||| ||||||  | |||||||| ||||| ||||    
T  48855637 tgtgtccttaaggcacaagttaatgagctaaaagtggaaataaattgttgtaattaattcatttg 48855573  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 7509815 - 7509747
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaat 94  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  7509815 aaatgctaacttttgcccttaaggcacaagttaatgagtcaaaagtagaaatattgtgttgtaatcaat 7509747  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 2554244 - 2554180
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    |||||||||| |||||||||||||||||||||||||| |||||| |||||||||||  |||||||    
T  2554244 aaatgctaacttgtgcccttaaggcacaagttaatgaatcaaaaatagaaatatttaattgtaat 2554180  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 13901997 - 13902066
Alignment:
Q  24 gaaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaat 94  Q
    ||||||| |||| ||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  13901997 gaaaatgttaacttgtacctttaaggca-aaggtaatgagtcaaaagtagaaatatttggttgtaatcaat 13902066  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 3527864 - 3527932
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaat 94  Q
    ||||| ||||||||| ||||||| ||||||| ||| |||| ||||||||||||||| ||||||||||||    
T  3527864 aaatgttaacatgtgtccttaagacacaagtcaataagtccaaagtagaaatattttgttgtaatcaat 3527932  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 18873588 - 18873533
Alignment:
Q  24 gaaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatat 79  Q
    |||||||||||| |||||||||||| ||||| |||| |||||||||||||||||||    
T  18873588 gaaaatgctaacttgtgcccttaagacacaaattaacgagtcaaaagtagaaatat 18873533  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 50685590 - 50685641
Alignment:
Q  39 tgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    ||||||||||||||||||||||||| ||||||| |||||| || ||||||||    
T  50685590 tgcccttaaggcacaagttaatgagccaaaagtggaaataatttgttgtaat 50685641  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 34256103 - 34256139
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatga 62  Q
    |||||||||||||||||||||||||||| ||||||||    
T  34256103 aaatgctaacatgtgcccttaaggcacatgttaatga 34256139  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 39890819 - 39890871
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaata 78  Q
    |||| ||| |||||| ||||||| |||||||||||||||||||| ||||||||    
T  39890819 aaatcctagcatgtgtccttaagacacaagttaatgagtcaaaaatagaaata 39890871  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 40227721 - 40227657
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    ||||| |||| |||||| |||| ||||||||||||||| ||||||| |||||| || ||||||||    
T  40227721 aaatgttaacttgtgcctttaaagcacaagttaatgaggcaaaagtggaaataatttgttgtaat 40227657  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 2548971 - 2549022
Alignment:
Q  21 aatgaaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagta 72  Q
    |||||||||| |||| |||| |||||||| |||||||||||| |||||||||    
T  2548971 aatgaaaatgttaacttgtgtccttaaggaacaagttaatgaatcaaaagta 2549022  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 55323099 - 55323048
Alignment:
Q  27 aatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaata 78  Q
    ||||||||| |||||||||||||||||||||| ||| |||||  ||||||||    
T  55323099 aatgctaacttgtgcccttaaggcacaagttagtgaatcaaatatagaaata 55323048  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 1846140 - 1846196
Alignment:
Q  21 aatgaaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaat 77  Q
    ||||||||||||||| |||||||||||| |||| ||||| || || ||||| |||||    
T  1846140 aatgaaaatgctaacttgtgcccttaagacacatgttaaggaatctaaagtggaaat 1846196  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 53133450 - 53133486
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatga 62  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  53133450 aaatgttaacttgtgcccttaaggcacaagttaatga 53133486  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 929010 - 929078
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaat 94  Q
    ||||| |||| |||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  929010 aaatgttaacttgtgtccttaagacacaagttaaagagtcaaaagtagaaatattttgttgtaatcaat 929078  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 43412785 - 43412839
Alignment:
Q  24 gaaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaata 78  Q
    |||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||    
T  43412785 gaaaatgctaacgtgtgcccttaaggcacaagttaattagttaaaagtggaaata 43412839  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 34504161 - 34504213
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaata 78  Q
    ||||| |||| |||||||||||| ||||||||||||| |||||||||||||||    
T  34504161 aaatgttaacttgtgcccttaagacacaagttaatgaatcaaaagtagaaata 34504213  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 3903683 - 3903737
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatt 80  Q
    |||||||||| ||||| |||||  ||||||||||||||||| |||||||||||||    
T  3903683 aaatgctaacttgtgctcttaaaccacaagttaatgagtcagaagtagaaatatt 3903737  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 12972896 - 12972858
Alignment:
Q  30 gctaacatgtgcccttaaggcacaagttaatgagtcaaa 68  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  12972896 gctaacttgtgcccttaaggcacaagttaatgattcaaa 12972858  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 44966181 - 44966139
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaa 68  Q
    ||||| |||| |||||||||||||||||||||||||| |||||    
T  44966181 aaatgttaacttgtgcccttaaggcacaagttaatgattcaaa 44966139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 2080687 - 2080618
Alignment:
Q  25 aaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaat 94  Q
    ||||||||||| ||||| ||||||  ||||||||  |||||||||||| |||||||   |||||||||||    
T  2080687 aaaatgctaacttgtgctcttaagatacaagttagcgagtcaaaagtataaatattgttttgtaatcaat 2080618  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 37425735 - 37425686
Alignment:
Q  45 taaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaat 94  Q
    |||||| |||||||||||||||||| ||||||||||  | ||||||||||    
T  37425735 taaggctcaagttaatgagtcaaaaatagaaatattgtgctgtaatcaat 37425686  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 34929353 - 34929301
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaata 78  Q
    ||||| |||| ||||||||||||||||||||| || || |||| |||||||||    
T  34929353 aaatgttaacttgtgcccttaaggcacaagtttataagccaaatgtagaaata 34929301  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 29429605 - 29429658
Alignment:
Q  37 tgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  29429605 tgtgcccttaaggcacaagttaaagagtcaaaagtggaaatattttgttgtaat 29429658  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 30873120 - 30873074
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagta 72  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||    
T  30873120 aaatgctaacttgtgcccttaaggcacaagttaatgagtcaagagta 30873074  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 36187497 - 36187564
Alignment:
Q  23 tgaaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    ||||||||||||| |||||| |||||  |||||||||||| | ||||||| |||||||| ||||||||    
T  36187497 tgaaaatgctaacttgtgcctttaagatacaagttaatgaattaaaagtaaaaatattttgttgtaat 36187564  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 36187647 - 36187702
Alignment:
Q  32 taacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgt 87  Q
    ||||||||| ||||||| ||||||||||||||||||||||||  |||||| |||||    
T  36187647 taacatgtgtccttaagacacaagttaatgagtcaaaagtagggatattttgttgt 36187702  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 29855532 - 29855468
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    ||||| |||| | |||||||||| ||||||| ||||||||||| ||| |||||||| ||||||||    
T  29855532 aaatgttaacttatgcccttaagacacaagtaaatgagtcaaatgtaaaaatattttgttgtaat 29855468  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 14513052 - 14513008
Alignment:
Q  24 gaaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaa 68  Q
    |||||||||||| ||||  | ||||||||||||||||||||||||    
T  14513052 gaaaatgctaacttgtgtacataaggcacaagttaatgagtcaaa 14513008  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 31820723 - 31820654
Alignment:
Q  24 gaaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaa 93  Q
    ||||||| |||| |||||||||||||| ||||||||| |||||||||| |||||| || |||||||||||    
T  31820723 gaaaatgttaacttgtgcccttaaggcgcaagttaataagtcaaaagtggaaataatttgttgtaatcaa 31820654  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 28773127 - 28773094
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaa 59  Q
    |||||||||| |||||||||||||||||||||||    
T  28773127 aaatgctaacttgtgcccttaaggcacaagttaa 28773094  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 49044706 - 49044743
Alignment:
Q  53 aagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    |||||||||||||||||||||||||||||  |||||||    
T  49044706 aagttaatgagtcaaaagtagaaatattttattgtaat 49044743  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 29731052 - 29731004
Alignment:
Q  40 gcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgta 88  Q
    |||||||||||| |||||||||| |||||||| |||||| || ||||||    
T  29731052 gcccttaaggcataagttaatgaatcaaaagttgaaataatttgttgta 29731004  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 32854239 - 32854307
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaat 94  Q
    |||||||||| |||||||||||  ||||||||||||||| |||||| |||||| || ||| ||||||||    
T  32854239 aaatgctaacctgtgcccttaaaacacaagttaatgagttaaaagtggaaataatttgttctaatcaat 32854307  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 48723392 - 48723343
Alignment:
Q  41 cccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    ||||||||||||||||||||||||  ||||| ||||||||| ||||||||    
T  48723392 cccttaaggcacaagttaatgagtttaaagtggaaatattttgttgtaat 48723343  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 33645349 - 33645281
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagtt-----aatgagtcaaaagtagaaatatttggttgtaa 89  Q
    |||||||||| |||||||||||||||||||||     |||||||||||||| |||||| || |||||||    
T  33645349 aaatgctaacttgtgcccttaaggcacaagttaatgtaatgagtcaaaagtggaaataatttgttgtaa 33645281  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 48047038 - 48046987
Alignment:
Q  26 aaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaat 77  Q
    |||||||||| |||||||||||||||||||||||| | |||||  |||||||    
T  48047038 aaatgctaacttgtgcccttaaggcacaagttaataaatcaaatatagaaat 48046987  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 17503696 - 17503631
Alignment:
Q  24 gaaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    |||||||||||  |||||||| ||| ||||||||||||| |||||| ||||||||||| ||| ||||    
T  17503696 gaaaatgctaatttgtgccctcaagacacaagttaatgaatcaaaa-tagaaatattttgttataat 17503631  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 17549518 - 17549583
Alignment:
Q  24 gaaaatgctaacatgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaat 90  Q
    |||||||||||  |||||||| ||| ||||||||||||| |||||| ||||||||||| ||| ||||    
T  17549518 gaaaatgctaatttgtgccctcaagacacaagttaatgaatcaaaa-tagaaatattttgttataat 17549583  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 48030231 - 48030193
Alignment:
Q  42 ccttaaggcacaagttaatgagtcaaaagtagaaatatt 80  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  48030231 ccttaaggcacatgttaacgagtcaaaagtagaaatatt 48030193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 33188197 - 33188148
Alignment:
Q  42 ccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatc 91  Q
    ||||||||||||||||||| ||| ||| |||||||||||| |||| ||||    
T  33188197 ccttaaggcacaagttaataagttaaatgtagaaatattttgttgaaatc 33188148  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 14055738 - 14055779
Alignment:
Q  24 gaaaatgctaacatgtgcccttaaggcacaagttaatgagtc 65  Q
    |||||||||||| |||| ||||||||||||||||| ||||||    
T  14055738 gaaaatgctaacttgtgtccttaaggcacaagttagtgagtc 14055779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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