View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10187_low_46 (Length: 253)
Name: NF10187_low_46
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_46 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 41102491 - 41102256
Alignment:
| Q |
18 |
aacatagacagtcataattctgacctcatcaagcaaaaacaacaaatattggaagccaaattcaaaccgaaagtaattggtgatctcaaatatttccttg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41102491 |
aacatagacagtcataattctgacctcatcaagcaaacacaacaaatattggaagccaaattcaaaccgaaagtacttggtgatctcaaatatttccttg |
41102392 |
T |
|
| Q |
118 |
gcctacagatagctaagtcaaagcaaggttttcacttatgccaacacaaatatactatgaaattgttaactcacacattattccttgcagccaaacctaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41102391 |
gcctacagatagctaagtcaaagcaaggttttcacttatgccaacacaaatatactatgaaattgttaactcacacattattccttgcagccaaacctaa |
41102292 |
T |
|
| Q |
218 |
acttgttattgatcatcagacttggcttaatgatac |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41102291 |
acttgttattgatcatcagacttggcttaatgatac |
41102256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University