View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_48 (Length: 251)
Name: NF10187_low_48
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_48 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 3629589 - 3629349
Alignment:
| Q |
11 |
cacagaatctattccaacaatggccaaactcaccaccacttcaaatttcctcaaatcacttcactctttctccttcctcagattcacttctcctttctcc |
110 |
Q |
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| T |
3629589 |
cacataatctattccaacaatggccaaactcaccaccacttcaaatttcctcaaatcacttcactctttctccttcctcagattcacttctcctttctcc |
3629490 |
T |
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| Q |
111 |
tttccaggtacacactttacttagcatttccccttataaatcacaacactaacaaaaacactcagctatcatattcnnnnnnncaggtaaacatcattct |
210 |
Q |
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| T |
3629489 |
tttccaggtacacactttacttagcatttccccttataaatcacaacactaacaaaaacactcagctatcatattctttttttcaggtaaacatcattct |
3629390 |
T |
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| Q |
211 |
caacacacgttggcaacagaactagcttcattaatcgaaga |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629389 |
caacacacgttggcaacagaactagcttcattaatcgaaga |
3629349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 22513240 - 22513203
Alignment:
| Q |
40 |
tcaccaccacttcaaatttcctcaaatcacttcactct |
77 |
Q |
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||||||||||||||| ||||||||||| |||||||||| |
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| T |
22513240 |
tcaccaccacttcaagtttcctcaaataacttcactct |
22513203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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