View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_5 (Length: 421)
Name: NF10187_low_5
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 98 - 270
Target Start/End: Complemental strand, 35203841 - 35203665
Alignment:
| Q |
98 |
agaaaacaataaccgaatnnnnnnnncagcttagatgaatcactaaaataaactataatatata----caaaacttatgttataatacgtattaaacaca |
193 |
Q |
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| T |
35203841 |
agaaaacaataaccgaatcaaaaaaacagcttagatgaatcactaaaataaactataatatataaatacaaaacttatgttataatacgtattaaacaca |
35203742 |
T |
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| Q |
194 |
caattattcgtacaaccaannnnnnnnnnnnnacatctttaatatactttaataccaattgaactacaactcacatt |
270 |
Q |
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| T |
35203741 |
caattattcgtacaaccaatttttaattttttacatctttaatatactttaataccaattgaactacaactcacatt |
35203665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 304 - 405
Target Start/End: Complemental strand, 35203631 - 35203530
Alignment:
| Q |
304 |
ctcacaaatctaatcaatttcatcatctcatccagtttttaaaacatttgataaaatatcaccaccaatattcatgcattagtaaagtacgtacatagat |
403 |
Q |
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| T |
35203631 |
ctcacaaatctcataaatttcatcatctcatccagtttttaaaacatttgataaaatatcaccacccatattcatgcattagtaaagtacatacatagat |
35203532 |
T |
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| Q |
404 |
ag |
405 |
Q |
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|| |
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| T |
35203531 |
ag |
35203530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 35204258 - 35204212
Alignment:
| Q |
56 |
tattaaaagctgcatcaaataccgtgcttccaagattacttcagaaa |
102 |
Q |
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| T |
35204258 |
tattaaaagctgcatcaaatactgtgcttccaagattacttcagaaa |
35204212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 12672688 - 12672734
Alignment:
| Q |
56 |
tattaaaagctgcatcaaataccgtgcttccaagattacttcagaaa |
102 |
Q |
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| T |
12672688 |
tattaaaagctgcatcaaatactgtgctcccaagattacttcagaaa |
12672734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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