View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_52 (Length: 249)
Name: NF10187_low_52
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2483849 - 2483622
Alignment:
| Q |
1 |
aatgcctctgaatatttttaacaaactaagaaaaccaaaataacaaattaagaaaaccaaatcactatcaatataacgaatattcaaaagacaaacctaa |
100 |
Q |
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| T |
2483849 |
aatgcctctgaagatttttaacaaactaagaaaaccaaaataacaaattaagaaaaccaaatcactatcaatataacgaatattcaaaagacaaaccaaa |
2483750 |
T |
|
| Q |
101 |
aacaatcccaaacttttggaattcgacggcagaagcgattagtggttcaagcggatcgaaccatgctcttcataccatgttaacaatacaaatacgtaca |
200 |
Q |
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| T |
2483749 |
aacaatcccaaacttttggaattcgacggcagaagcgattagtggttcaagcggatcgaaccatgctcttgataccatgttaacaatacaaa----taca |
2483654 |
T |
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| Q |
201 |
gatataaaataaagaaaaatagaataagaaca |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2483653 |
gatataaaataaagaaaaatagaataagaaca |
2483622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 2479359 - 2479191
Alignment:
| Q |
33 |
aaccaaaataacaaattaagaaaaccaaatcactatcaatata----acgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacg |
128 |
Q |
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|||||| ||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
2479359 |
aaccaacataacaaatcaagagaactaaatcactatcaatatatataacgaatattcaaaagacaaaccaaaaacaatcccaagcttttggaattcgacg |
2479260 |
T |
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| Q |
129 |
gcagaagcgattagtggttc--aagcggatcgaaccatgctcttcataccatgttaacaatacaaatac |
195 |
Q |
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| T |
2479259 |
gtggaaacgattagtggttcaaaagaggatcaaaccatgctcttcatacaatgttaacaacacatatac |
2479191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 1175437 - 1175506
Alignment:
| Q |
106 |
tcccaaacttttggaattcgacggcagaagcgattagtggttcaagcggatcgaaccatgctcttcatac |
175 |
Q |
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| T |
1175437 |
tcccaaacttttgggattcgacagcggaagcgactagtggttcaagacgatcaaaccatactcttgatac |
1175506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 3775671 - 3775795
Alignment:
| Q |
37 |
aaaataacaaattaagaaaaccaaatcactatcaatataacgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacggcagaagc |
136 |
Q |
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|||||||||| || || |||||||||| || ||||||| ||| |||||||| |||| | || |||||||||||||||| ||| |||| ||||||| |
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| T |
3775671 |
aaaataacaagttgggagaaccaaatcatgattaatataatcaatcttcaaaaggcaaatcaaacacaatcccaaactttttgaaatcgataacagaagc |
3775770 |
T |
|
| Q |
137 |
gattagtggttcaa-gcggatcgaa |
160 |
Q |
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|| |||||||||| |||||||||| |
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| T |
3775771 |
gacaagtggttcaaggcggatcgaa |
3775795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 24135127 - 24135082
Alignment:
| Q |
149 |
aagcggatcgaaccatgctcttcataccatgttaacaatacaaata |
194 |
Q |
| |
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||||||||| ||||| |||||| ||||||| ||||||||||||||| |
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|
| T |
24135127 |
aagcggatcaaaccacgctcttgataccatcttaacaatacaaata |
24135082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 3950697 - 3950617
Alignment:
| Q |
109 |
caaacttttggaattcgacggcagaagcgattagtggttcaag-cggatcgaaccatgctcttcataccatgttaacaata |
188 |
Q |
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|||||||||| |||||| ||||||| || ||||||||||| |||||| ||||||||| | ||||||||||||||||| |
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| T |
3950697 |
caaacttttgagattcgatagcagaagtgacaagtggttcaaggcggatcaaaccatgctttcgataccatgttaacaata |
3950617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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