View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_53 (Length: 248)
Name: NF10187_low_53
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17445991 - 17446220
Alignment:
| Q |
1 |
atgcggcagagtgagatcaattttgacacagaaatctggttcttcataataaccgaatgttgattaggcgcggacacattttactgatctgtatctgtat |
100 |
Q |
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| T |
17445991 |
atgcggcagagtgagatcaattttgaaacagaaatctggttcttcataataaccgaatgttgattaggcgcggacacattttaccgatctgtatctgtat |
17446090 |
T |
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| Q |
101 |
tgaatatatgaggactgaattttgtgtaattctctgttgttcatatgttgaaattattagtttcattaaggtttgaattgtttgtttgattaactcttga |
200 |
Q |
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| T |
17446091 |
tgaatacatgaggactgaattttgtgtaattctctgttgttcatatgttgaaattattagtttcattaaggtttgaattgtttgtttgattaactcttga |
17446190 |
T |
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| Q |
201 |
tatttgttacttctcatgtaaatgataata |
230 |
Q |
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| T |
17446191 |
tatttgttacttctcatgtaaatgataata |
17446220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 33414212 - 33414051
Alignment:
| Q |
1 |
atgcggcagagtgagatcaattttgacacagaaatctggttcttcataataaccgaatgttgattaggcgcggacacattttactgatctgtatctgtat |
100 |
Q |
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| T |
33414212 |
atgcggcagagtgagaccaattttgaaacagaaatctgcttcttcataataaccaaatgttgattaggcgcggacacgttttactgatctgtatctgtat |
33414113 |
T |
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| Q |
101 |
tga--atatatgaggactgaattttgtgtaattctctgttgttcatatgttgaaattattagtt |
162 |
Q |
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| T |
33414112 |
tgaggatacatgaggactgaattttgtgtaattctctgttgtt--tgtgttgaaattattagtt |
33414051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 33351298 - 33351174
Alignment:
| Q |
9 |
gagtgagatcaattttg--acacagaaatctggttcttcataataaccgaatgttgattaggcgcggacacattttactgatctgtatctgtattgaata |
106 |
Q |
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|||||||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33351298 |
gagtgagatcaatttttgaaaacagaaatcttgttcttcataataaccaaatgttgattaggcgcggacacattttactgatctgta---gtattgaatt |
33351202 |
T |
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| Q |
107 |
ta--tgaggactgaattttgtgtaattc |
132 |
Q |
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| T |
33351201 |
tacttgaggactgaattttgtgtaattc |
33351174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 33414030 - 33413960
Alignment:
| Q |
160 |
gtttcattaaggtttgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataata |
230 |
Q |
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| T |
33414030 |
gtttcattaaggtttgaattgtttgtttcattaattcttgacatttgttacttatcatgtaaatgataata |
33413960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 31565456 - 31565512
Alignment:
| Q |
174 |
tgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataata |
230 |
Q |
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| T |
31565456 |
tgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataata |
31565512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 33351130 - 33351059
Alignment:
| Q |
159 |
agtttcattaaggtttgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataata |
230 |
Q |
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|||||| |||||||||||||||||||||| ||||| |||||| |||||||||| || |||||| ||||||| |
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| T |
33351130 |
agtttctttaaggtttgaattgtttgtttcattaattcttgacatttgttactactattgtaaaggataata |
33351059 |
T |
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