View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_56 (Length: 243)

Name: NF10187_low_56
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_56
NF10187_low_56
[»] chr2 (2 HSPs)
chr2 (18-243)||(39138220-39138448)
chr2 (21-77)||(39380883-39380939)
[»] chr7 (1 HSPs)
chr7 (20-222)||(19808093-19808295)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 39138448 - 39138220
Alignment:
Q  18 gttagatgcaactgcatatttggatagcagagaattaagatccctcatatttttagaagcaacagcaaatgaagatgacaataggatttttggaatgtat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39138448 gttagatgcaactgcatatttggatagcagagaattaagatccctcatatttttagaagcaacagcaaatgaagatgacaataggatttttggaatgtat 39138349  T
Q  118 gggtgagagagggaatcattatattaattgttataatcaaagtcaatatagaagcttaactgaatcaccaaagatagcgttaaattgattaataattata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39138348 gggtgagagagggaatcattatattaattgttataatcaaagtcaatatagaagcttaactgaatcaccaaagatagtgttaaattgattaataattata 39138249  T
Q  218 aacaa---ttgaaatagtccaaattagtt 243  Q
    |||||   |||||||||||||||||||||    
T  39138248 aacaagacttgaaatagtccaaattagtt 39138220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 39380883 - 39380939
Alignment:
Q  21 agatgcaactgcatatttggatagcagagaattaagatccctcatatttttagaagc 77  Q
    |||||||||||||||||| ||||||||| | ||||| |||||||||||| |||||||    
T  39380883 agatgcaactgcatatttagatagcagatatttaagctccctcatatttatagaagc 39380939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 19808295 - 19808093
Alignment:
Q  20 tagatgcaactgcatatttggatagcagagaattaagatccctcatatttttagaagcaacagcaaatgaagatgacaataggatttttggaatgtatgg 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  19808295 tagatgcaactgcatatttggatagcagaggattaagatccctcatatttttagaaacaacagcaaatgaagatgacaaatggatttttggaatgtatgg 19808196  T
Q  120 gtgagagagggaatcattatattaattgttataatcaaagtcaatatagaagcttaactgaatcaccaaagatagcgttaaattgattaataattataaa 219  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  19808195 gtgagagaggaaatcattatattaattgttatagtcaaagtcaatatagaagcttaactgaatcaccaaagacagtgttaaattgattaataattataaa 19808096  T
Q  220 caa 222  Q
    |||    
T  19808095 caa 19808093  T

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