View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_59 (Length: 241)

Name: NF10187_low_59
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_59
NF10187_low_59
[»] chr8 (2 HSPs)
chr8 (1-223)||(27832446-27832668)
chr8 (151-223)||(27838194-27838270)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27832446 - 27832668
Alignment:
Q  1 taggtatatttaattatatttgaagtttttcttactgatattttagatcaaaggattaggaagcaagtgctaaatgagataaaggaaattaggtttcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27832446 taggtatatttaattatatttgaagtttttcttactgatattttagatcaaaggattaggaagcaagtgctaaatgagataaaggaaattaggtttcaaa 27832545  T
Q  101 taacaaagctcttgcgcagcaaaatgtgaataagatattgctaatgggaaacagcaaaatcacaccacaattggtgtaatagtgtatgaacttgttttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27832546 taacaaagctcttgcgcagcaaaatgtgaataagatattgctaatgggaaacagcaaaatcacaccacaattggtgtaatagtgtatgaacttgttttta 27832645  T
Q  201 tgccatcttgtggggacaattac 223  Q
    |||||||||||||||||||||||    
T  27832646 tgccatcttgtggggacaattac 27832668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 27838194 - 27838270
Alignment:
Q  151 acagcaaaatcacaccacaattggtgtaatagtgt----atgaacttgtttttatgccatcttgtggggacaattac 223  Q
    ||||||||||||||| ||| ||||| |||||||||    ||| |||||||| ||| ||| |||||||||||||||||    
T  27838194 acagcaaaatcacactacagttggtctaatagtgtgagtatgtacttgtttgtatcccaccttgtggggacaattac 27838270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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