View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10187_low_6 (Length: 415)
Name: NF10187_low_6
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 13 - 399
Target Start/End: Original strand, 8651742 - 8652128
Alignment:
| Q |
13 |
aaggtgagcaaaaaggttatcaataggaccagtgccggtgtaaatgtgctggaaccaagctcccatcacagccaacatagccaatctcccattcttaatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8651742 |
aaggtgagcaaaaaggttatcaataggaccagtgccggtgtaaatgtgctggaaccaagctcccatcacagccaacatagccaatctcccattcttaatt |
8651841 |
T |
|
| Q |
113 |
tcctttgttctcaactccttaagcttctgaggagaaccacttccccaaccaagtggatcaaaccaaagtccacccgggtatcctacatcagttcctgtga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8651842 |
tcctttgttctcaactccttaagcttctgaggagaaccacttccccaaccaagtggatcaaaccaaagtccacccgggtatcctacatcagttcctgtga |
8651941 |
T |
|
| Q |
213 |
gcttgttgtttggaaagatagggtcagtgttgacacaacctggattgaggatgtcagcccaccttctaccctcagcccaaccgatgaaaatgagctcaac |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8651942 |
gcttgttgtttggaaagatagggtcagtgttgacacaacctggattgaggatgtcagcccaccttctaccctcggcccaaccgatgaaaatgagctcaac |
8652041 |
T |
|
| Q |
313 |
tatgaagagtgtggtggtgtctgtgaaatactcttgctctccagcagtgtaccatgaaggtgtgttcaagataccaatctttgttag |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8652042 |
tatgaagagtgtggtggtgtctgtgaaatactcttgctctccagcagtgtaccatgaaggtgtgttcaagataccaatctttgttag |
8652128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University