View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10187_low_61 (Length: 241)
Name: NF10187_low_61
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_61 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 34630989 - 34631207
Alignment:
| Q |
1 |
agcacggtggaggagatggcaagtttgggatgggaggaggggggtggagcgtggttgtggagacgtcacctattagcatgggaggaagaggaagtgaggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34630989 |
agcacggtggaggagatggcaagtttgggatgggaggaggggggtggagcgtggttgtggagacgtcgcctattagcatgggaggaagaggaagtgaggg |
34631088 |
T |
|
| Q |
101 |
aatggattattttgttacataacgttgttttgtaggctcatgtttatgataggtggaaatggctgctagatcctatccaaggttactccgtgcgtggggc |
200 |
Q |
| |
|
|||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34631089 |
aatggactgttttgttacataaccttgttttgtaggctcatgtttatgataggtggaaatggctgctagatcctatccaaggttactccgtgcgtggggc |
34631188 |
T |
|
| Q |
201 |
atatcaatttctcatgtcc |
219 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
34631189 |
atatcgatttctcatgtcc |
34631207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 26679757 - 26679860
Alignment:
| Q |
111 |
tttgttacataacgttgttttgtaggctcatgtttatgataggtggaaatggctgctagatcctatccaaggttactccgtgcgtggggcatatcaattt |
210 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| |||||| |||||| ||||||||||||||||| || ||||| |||||||||||||| ||||||||| |
|
|
| T |
26679757 |
tttgttacataacattgttttgtaggatcatgttcatgataagtggaagtggctgctagatcctattcatggttattccgtgcgtggggcttatcaattt |
26679856 |
T |
|
| Q |
211 |
ctca |
214 |
Q |
| |
|
|||| |
|
|
| T |
26679857 |
ctca |
26679860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 18591415 - 18591200
Alignment:
| Q |
7 |
gtggaggagatggcaagtttgggatgggaggaggggggtggagcgtggttgtggagacgtcacctattagcatgggaggaagaggaagtgagggaatgga |
106 |
Q |
| |
|
|||||| ||||||| ||||| || ||||||||||| | ||||||||| |||||||||||| || | | ||||| || || |||||||| ||||| |
|
|
| T |
18591415 |
gtggagtagatggcgagttttgggtgggaggagggatgaggagcgtgggtgtggagacgtcgtctgcttgtgtgggatgaggaagaagtgagagaatgct |
18591316 |
T |
|
| Q |
107 |
ttattttgttacataacgttgttttgtagg-ctcatgtttatgataggtggaaatggctgctagatcctatccaaggttactccgtgcgtggggcatatc |
205 |
Q |
| |
|
| |||||||||||||| |||||||| || |||||||| ||||||||||||||||| || |||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
18591315 |
atgttttgttacataacattgttttgcggggctcatgttcatgataggtggaaatggttgttagatcctattcaaggttactccatgcgtggggcttatc |
18591216 |
T |
|
| Q |
206 |
aatttctcatgtccgc |
221 |
Q |
| |
|
| || ||| ||||||| |
|
|
| T |
18591215 |
atttcctcgtgtccgc |
18591200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 48352141 - 48351985
Alignment:
| Q |
7 |
gtggaggagatggcaagtttgggatgggaggaggggggtggagcgtggttgtggagacgtcacctattagcatgggaggaagaggaagtgagggaatgga |
106 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| |||||||| |||||| |||||||||| ||||||||||| |||||| ||| || |||||||||| | |
|
|
| T |
48352141 |
gtgggggagatggcgtgtttgggatgggaggaagggggtggcgcgtgggtgtggagacggagcctattagcat-ggaggaggagaaaatgagggaatgca |
48352043 |
T |
|
| Q |
107 |
--ttattttgttacataacgttgttttgtaggctcatgtttatgataggtggaaatgg |
162 |
Q |
| |
|
|| |||| |||| |||| |||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
48352042 |
cttttttttattacttaacattgttttgcaggctcatattcatgataggtggaaatgg |
48351985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 29420450 - 29420579
Alignment:
| Q |
88 |
gaggaagtgagggaatggattattttgttacataacgttgttttgtaggctcatgtttatgataggtggaaatggctgctagatcctatccaaggttact |
187 |
Q |
| |
|
||||||||||| || || || |||| ||||||||| |||||||||| ||||||||||||| |||||||||||| || |||||| ||| |||||||| | |
|
|
| T |
29420450 |
gaggaagtgagagagtgctttgttttattacataacattgttttgtacactcatgtttatgacaggtggaaatggttgttagatcttattcaaggttatt |
29420549 |
T |
|
| Q |
188 |
ccgtgcgtggggcatatcaatttctcatgt |
217 |
Q |
| |
|
| ||| ||||||| |||||||| ||||||| |
|
|
| T |
29420550 |
ctgtgtgtggggcttatcaattcctcatgt |
29420579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 41778583 - 41778653
Alignment:
| Q |
79 |
tgggaggaagaggaagtgagggaatggattattttgttacataacgttgttttgtaggctcatgtttatga |
149 |
Q |
| |
|
|||||||| ||||||||||||||||| || | |||||||||||| |||||||| ||| | ||||| |||| |
|
|
| T |
41778583 |
tgggaggaggaggaagtgagggaatgttttgtattgttacataacattgttttgcaggtttatgttcatga |
41778653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 21270790 - 21270734
Alignment:
| Q |
5 |
cggtggaggagatggcaagtttgggatgggaggaggggggtggagcgtggttgtgga |
61 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| || ||||| | |||| |||||| |
|
|
| T |
21270790 |
cggtggaggagatggcaaggttggggtgggaggaaggaggtggtgtgtgggtgtgga |
21270734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 21272804 - 21272748
Alignment:
| Q |
5 |
cggtggaggagatggcaagtttgggatgggaggaggggggtggagcgtggttgtgga |
61 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| || ||||| | |||| |||||| |
|
|
| T |
21272804 |
cggtggaggagatggcaaggttggggtgggaggaaggaggtggtgtgtgggtgtgga |
21272748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 53505023 - 53505107
Alignment:
| Q |
6 |
ggtggaggagatggcaagtttgggatgggaggaggggggtggagcgtggttgtggagacgtcacctattagcatgggaggaagag |
90 |
Q |
| |
|
||||||||||||| || ||||| |||||||| | ||| ||||||||| |||||||||| | | |||||||||||||||||| |
|
|
| T |
53505023 |
ggtggaggagatgtggaggttgggttgggaggaagagggaggagcgtgggtgtggagacgacgattgttagcatgggaggaagag |
53505107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University