View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_62 (Length: 240)

Name: NF10187_low_62
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_62
NF10187_low_62
[»] chr5 (4 HSPs)
chr5 (64-223)||(35802661-35802820)
chr5 (8-102)||(35854447-35854541)
chr5 (119-195)||(10521033-10521109)
chr5 (8-57)||(35802581-35802630)
[»] chr4 (6 HSPs)
chr4 (102-203)||(45878670-45878771)
chr4 (102-203)||(55705599-55705700)
chr4 (102-170)||(47293221-47293289)
chr4 (112-203)||(56208881-56208972)
chr4 (159-202)||(54304073-54304116)
chr4 (146-202)||(45860198-45860254)
[»] chr8 (1 HSPs)
chr8 (102-223)||(7972415-7972536)
[»] chr2 (1 HSPs)
chr2 (102-203)||(24354011-24354112)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 35802661 - 35802820
Alignment:
Q  64 tcattgtcaaggttaaagttttgagaaacccttcctcgaattgaaccggttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagt 163  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35802661 tcattgtcaaggttaaagttttgagaaaccgttcctcgaattgaaccagttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagt 35802760  T
Q  164 atcctgcacttattgccacatcagacattgaagtaatgacggggattttggaagcaagag 223  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||  |||| ||||||||||    
T  35802761 atcctgcacttgttgccgcatcagacattgaagcaatgacgggtttttttgaagcaagag 35802820  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 35854541 - 35854447
Alignment:
Q  8 acttgcctagagtcattaatctcaaacgaaccacactatctagcactttgtcattgtcattgtcaaggttaaagttttgagaaacccttcctcga 102  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||  |||  |||||||||||||||||||||||||||||| ||||||||    
T  35854541 acttgcctagagtcattaatctcaaatgaaccacattatctagcactttcacatcatcattgtcaaggttaaagttttgagaaacctttcctcga 35854447  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 10521109 - 10521033
Alignment:
Q  119 taagattttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaa 195  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||    
T  10521109 taagattttctgctacgatatctcctgctcccgttgccatgtagtatcctgcacttgctgctacatcagacattgaa 10521033  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 35802581 - 35802630
Alignment:
Q  8 acttgcctagagtcattaatctcaaacgaaccacactatctagcactttg 57  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||||||||    
T  35802581 acttgccgagagtcattaacctcaaacgaaccacattatctagcactttg 35802630  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 45878670 - 45878771
Alignment:
Q  102 aattgaaccggttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatg 201  Q
    ||||||||| ||||| || ||| ||||||| || ||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||| ||||    
T  45878670 aattgaaccagttaaggttagactttctgcaacaatagctcctgctcccattgccatgtagtatcctccacttgctgccacatcagacattgaagcaatg 45878769  T
Q  202 ac 203  Q
    ||    
T  45878770 ac 45878771  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 55705700 - 55705599
Alignment:
Q  102 aattgaaccggttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatg 201  Q
    ||||||||| ||||| ||||||||||||||||| ||   ||| ||||||||||||||||| |||||||||||   |||||| ||| ||||||||| ||||    
T  55705700 aattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgcactggctgccacgtcatacattgaagcaatg 55705601  T
Q  202 ac 203  Q
    ||    
T  55705600 ac 55705599  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 47293289 - 47293221
Alignment:
Q  102 aattgaaccggttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtatcctgc 170  Q
    ||||||||| ||||| |||||||||||||| || ||| ||||||| |||||||||| ||||||||||||    
T  47293289 aattgaaccagttaaggtaagattttctgcaacaataactcctgcgcccattgccacgtagtatcctgc 47293221  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 56208881 - 56208972
Alignment:
Q  112 gttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatgac 203  Q
    ||||| |||||||||||||| || ||| ||||||||||||||||||||| ||||||| |||||  || || || |||||| |||| ||||||    
T  56208881 gttaaggtaagattttctgcaacaataactcctgctcccattgccatgtggtatcctccacttgctgtcatatgagacatcgaagcaatgac 56208972  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 54304116 - 54304073
Alignment:
Q  159 gtagtatcctgcacttattgccacatcagacattgaagtaatga 202  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||    
T  54304116 gtagtatcctgcacttgttgccacatcagatattgaagcaatga 54304073  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 45860198 - 45860254
Alignment:
Q  146 ctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatga 202  Q
    ||||||| ||||| ||||||||| ||||   |||||||||||||||||||| |||||    
T  45860198 ctcccatcgccatatagtatcctccactagctgccacatcagacattgaagcaatga 45860254  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 7972415 - 7972536
Alignment:
Q  102 aattgaaccggttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatg 201  Q
    ||||||||| ||||| ||||| |||||||| || ||| ||||||| ||||||||||||||||||||||| || ||||||| |||||||||  ||| |||     
T  7972415 aattgaaccagttaaggtaaggttttctgcaacaataactcctgcgcccattgccatgtagtatcctgcgctcattgccagatcagacatcaaagcaata 7972514  T
Q  202 acggggattttggaagcaagag 223  Q
    || ||  |||||||||||||||    
T  7972515 actggttttttggaagcaagag 7972536  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 24354112 - 24354011
Alignment:
Q  102 aattgaaccggttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttattgccacatcagacattgaagtaatg 201  Q
    ||||||||| ||||| |||||| ||||||| || |||||  | | |||||||||||||||||||||| |||||  ||||||||||| ||| |||| ||||    
T  24354112 aattgaaccagttaaggtaagactttctgcaacaatagcatcagttcccattgccatgtagtatcctccacttgctgccacatcagccatcgaagcaatg 24354013  T
Q  202 ac 203  Q
    ||    
T  24354012 ac 24354011  T

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