View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_64 (Length: 240)

Name: NF10187_low_64
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_64
NF10187_low_64
[»] chr5 (3 HSPs)
chr5 (1-223)||(41101665-41101887)
chr5 (27-225)||(41091560-41091775)
chr5 (26-223)||(41080212-41080421)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41101887 - 41101665
Alignment:
Q  1 ccattgcaaccctcacatctgagttattcaagcattgtattttgtgatagtcaaagtggcatccaacttgccaagaacgttccaaacatatcaacttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41101887 ccattgcaaccctcacatctgagttattcaagcattgtattttgtgatagtcaaagtggcatccaacttgccaagaacgttccaaacatatcaacttcaa 41101788  T
Q  101 ttgtgattttatcctggaatatgtttgttcttgtttcctcatacttgttcacaatcatatcatatcagctccaaacatcaactagcttacccattgaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41101787 ttgtgattttatcctggaatatgtttgttcttgtttcctcaaacttgttcacaatcatatcatatcagctccaaacatcaactagcttacccattgaaaa 41101688  T
Q  201 aagcactactaaaatcccttttc 223  Q
    ||||||||| |||||||||||||    
T  41101687 aagcactaccaaaatcccttttc 41101665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 225
Target Start/End: Complemental strand, 41091775 - 41091560
Alignment:
Q  27 ttcaagcattgtattttgtgatagtcaaagtggcatccaacttgc----------------caagaacgttccaaacatatcaacttcaattgtgatttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||                |||||||||| |||||||||| ||||| |||||||||||    
T  41091775 ttcaagcattgtattttgtgatagtcaaagtggcatccaacttgcaactaagcccatttgccaagaacgttacaaacatatcgacttcgattgtgatttt 41091676  T
Q  111 atcctggaatatgtttgttcttgtttcctcatacttgttcacaatcatatcatatcagctccaaacatcaactagcttacccattgaaaaaagcacta-c 209  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |    
T  41091675 atccgggaatatgtttgttctagtttcctcaaacttgttcacaatcatatcataacaactccaaacatcaactagctgacccattgaaaaaagcactacc 41091576  T
Q  210 taaaatcccttttctg 225  Q
    |||||||||| |||||    
T  41091575 taaaatccctattctg 41091560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 41080421 - 41080212
Alignment:
Q  26 attcaagcattgtattttgtgatagtcaaagtggcatcca----------------acttgccaagaacgttccaaacatatcaacttcaattgtgattt 109  Q
    |||||||||||||||||||||||||||||||||||| |||                |||||||||||| |||||||||||||| || |  ||||| ||||    
T  41080421 attcaagcattgtattttgtgatagtcaaagtggcacccaacttgcaaataaccccacttgccaagaatgttccaaacatatcgacattgattgtcattt 41080322  T
Q  110 tatcctggaatatgtttgttcttgtttcctcatacttgttcacaatcatatcatatcagctccaaacatcaactagcttacccattgaaaaaagcacta- 208  Q
    |||||   |||||||||||||| ||||||||| | |||||| ||||||   ||||  ||||||| |||| |||||||| ||||||||| ||||||||||     
T  41080321 tatccaaaaatatgtttgttctagtttcctcaaatttgttcgcaatca---cata--agctccagacatgaactagctgacccattgacaaaagcactac 41080227  T
Q  209 ctaaaatcccttttc 223  Q
    |||||||||||||||    
T  41080226 ctaaaatcccttttc 41080212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University