View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_66 (Length: 239)

Name: NF10187_low_66
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_66
NF10187_low_66
[»] chr6 (5 HSPs)
chr6 (1-224)||(4368202-4368425)
chr6 (2-204)||(4363788-4363988)
chr6 (32-224)||(4358416-4358600)
chr6 (35-230)||(4417740-4417931)
chr6 (1-48)||(4358618-4358665)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4368425 - 4368202
Alignment:
Q  1 taatcttcattttgatgacatgttcattttcttatttgcactcaccttggaatagtcgggataaattgatcactggtattgttgaacaaaaaacatgcga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||     
T  4368425 taatcttcattttgatgacatgttcattttcttatttgcactcaccttggaatagtcgggataagttgatcactggtattgttgaacaaaaaacattcgt 4368326  T
Q  101 agaaaagaatcatggattcattcaggtgtgagacactgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4368325 agaaaagaatcatggattcattcaggtgtgagacactgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggat 4368226  T
Q  201 agatggcgttggtacgttaatatt 224  Q
    |||||| ||||||| |||||||||    
T  4368225 agatggtgttggtatgttaatatt 4368202  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 4363988 - 4363788
Alignment:
Q  2 aatcttcattttgatgacatgttcattttcttatttgcactcaccttggaatagtcgggataaattgatcactggtattgttgaacaaaaaacatgcgaa 101  Q
    |||||||||||| || ||||||||||||| ||||||||| ||||||| || |||||||||||| |||||||| ||||| |||||||||||| |||| |||    
T  4363988 aatcttcattttaatcacatgttcattttattatttgca-tcacctttgagtagtcgggataagttgatcacaggtatggttgaacaaaaa-catgggaa 4363891  T
Q  102 gaaaagaatcatggattcattcaggtgtgagacactgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggata 201  Q
    |||||||| || || ||||| || |||||||||||||| ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  4363890 gaaaagaaccacggtttcatccaagtgtgagacactgaaagctgagaatgcagctgatgaccacatcaggcagttgttcttgccaaaactagctgggata 4363791  T
Q  202 gat 204  Q
    |||    
T  4363790 gat 4363788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 4358600 - 4358416
Alignment:
Q  32 ttatttgcactcaccttggaatagtcgggataaattgatcactggtattgttgaacaaaaaacatgcgaagaaaagaatcatggattcattcaggtgtga 131  Q
    ||||||||| ||||||| ||||||||||||||| |||||||| ||||| |||||||||||| |||| || ||||||||||| || ||||||||      |    
T  4358600 ttatttgcattcacctttgaatagtcgggataagttgatcacaggtatggttgaacaaaaa-catgggacgaaaagaatcacggtttcattca------a 4358508  T
Q  132 gacactgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggatagatggcgttggtacgttaatatt 224  Q
    |||||| | ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||| ||||| ||||||| || ||||||    
T  4358507 gacactca-agctgagaatgcagctgacgaccacatcaggcagttgttctagccaaaactagctgggatggatggtgttggtatgtcaatatt 4358416  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 4417740 - 4417931
Alignment:
Q  35 tttgcactcaccttggaatagtcgggataaattgatcactggtattgttgaacaaaaaacatgcgaagaaaagaatcatggattcattcaggtgtgagac 134  Q
    |||||| |||||||  || ||| |||||||   |||||| ||||| |||||||||||   ||| ||||||||||||||  | ||||||   |||||||||    
T  4417740 tttgcattcaccttttaacagttgggataaggagatcacaggtatggttgaacaaaagg-atgggaagaaaagaatcacagtttcatttgagtgtgagac 4417838  T
Q  135 actgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggatagatggcgttggtacgttaatattgatgat 230  Q
    ||||| ||||||| ||||||||||  ||||||||||| |   |||||||||||||||||||||||| ||||  ||||||| || |||||| |||||    
T  4417839 actgaaagctgaggatgcagctgaagaccacatcaggaa---gttcatgccaaaactagctgggatggatgctgttggtatgtcaatattaatgat 4417931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4358665 - 4358618
Alignment:
Q  1 taatcttcattttgatgacatgttcattttcttatttgcactcacctt 48  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||    
T  4358665 taatcttcattttgatgacatgttcattttattatttgcattcacctt 4358618  T

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