View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_7 (Length: 409)

Name: NF10187_low_7
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_7
NF10187_low_7
[»] chr3 (12 HSPs)
chr3 (1-192)||(54850421-54850612)
chr3 (241-391)||(43453439-43453589)
chr3 (241-380)||(14746811-14746949)
chr3 (240-348)||(43454103-43454210)
chr3 (241-382)||(42020793-42020934)
chr3 (241-380)||(14746041-14746180)
chr3 (300-373)||(35982554-35982627)
chr3 (241-289)||(15287567-15287615)
chr3 (241-292)||(16076210-16076261)
chr3 (241-291)||(41419617-41419667)
chr3 (331-391)||(54308966-54309026)
chr3 (303-351)||(41418822-41418869)
[»] chr8 (8 HSPs)
chr8 (241-396)||(36402918-36403073)
chr8 (241-360)||(26132062-26132181)
chr8 (245-372)||(10331470-10331596)
chr8 (246-379)||(10333542-10333674)
chr8 (241-291)||(5434032-5434082)
chr8 (239-351)||(44376641-44376752)
chr8 (241-291)||(36402201-36402251)
chr8 (241-290)||(26847097-26847146)
[»] chr1 (6 HSPs)
chr1 (241-396)||(13416228-13416383)
chr1 (239-396)||(5490509-5490665)
chr1 (238-373)||(31109236-31109371)
chr1 (241-292)||(31116681-31116732)
chr1 (244-291)||(5491334-5491381)
chr1 (241-288)||(26240872-26240919)
[»] chr7 (12 HSPs)
chr7 (241-396)||(24874471-24874626)
chr7 (238-380)||(767133-767275)
chr7 (241-380)||(767875-768014)
chr7 (241-291)||(41965775-41965825)
chr7 (241-351)||(24873751-24873861)
chr7 (239-382)||(27918516-27918660)
chr7 (310-380)||(27917764-27917834)
chr7 (243-321)||(21975693-21975771)
chr7 (241-288)||(18569020-18569067)
chr7 (241-288)||(18652891-18652938)
chr7 (241-291)||(41965112-41965162)
chr7 (241-289)||(42817798-42817846)
[»] chr4 (5 HSPs)
chr4 (241-396)||(21281054-21281209)
chr4 (241-391)||(45140454-45140604)
chr4 (241-372)||(45141060-45141191)
chr4 (243-291)||(53778413-53778461)
chr4 (241-285)||(42792775-42792819)
[»] scaffold0006 (2 HSPs)
scaffold0006 (264-396)||(285903-286035)
scaffold0006 (246-291)||(285183-285228)
[»] chr6 (5 HSPs)
chr6 (241-382)||(10965230-10965371)
chr6 (241-368)||(2138477-2138603)
chr6 (241-382)||(709322-709462)
chr6 (241-292)||(10966377-10966428)
chr6 (241-351)||(8113373-8113482)
[»] chr2 (5 HSPs)
chr2 (241-348)||(7754012-7754119)
chr2 (241-288)||(7754968-7755015)
chr2 (241-283)||(127741-127783)
chr2 (241-291)||(4716871-4716921)
chr2 (241-289)||(44296860-44296908)
[»] chr5 (5 HSPs)
chr5 (241-290)||(23253485-23253534)
chr5 (241-289)||(39466885-39466933)
chr5 (240-288)||(24565572-24565620)
chr5 (240-288)||(24606608-24606656)
chr5 (241-289)||(39937906-39937954)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 54850421 - 54850612
Alignment:
Q  1 gaaaggtgcagtcacctcattcactcttggtttgattgatttagtttttgaacctattacacaaactgttatttttcacgatactatcattgatgtttgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  54850421 gaaaggtgcagtcacctcattcactcttggtttgattgatttagtttttgaacctattacgcaaactgttatttttcacgatactatcattgatgtttgg 54850520  T
Q  101 gaagattttaaggagcatttttctgaagctgatagaatacagatagttaatttgcgttccactatcaacaatctcaagcaagtttcacgttc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54850521 gaagattttaaggagcatttttctgaagctgatagaatacagatagttaatttgcgttccactatcaacaatctcaagcaagtttcacgttc 54850612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 391
Target Start/End: Original strand, 43453439 - 43453589
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    ||||||||||||||||| ||||||||||  ||| |||||| |||||||||||       ||  ||||| |||||||||||| | ||||||| ||||||||    
T  43453439 ggtggattctagggtgagggtccaattaaatccctcaccgctggaccacgagaaaaataccaatagattaaatagatggttcaaatttatttaaattaaa 43453538  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcctaacattgtttc 391  Q
    | || |||||| ||||| |||||||||||||| ||||||||| || |||||    
T  43453539 attgggaacatgtacaactactcacattcaattctatcctaaaatggtttc 43453589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 380
Target Start/End: Complemental strand, 14746949 - 14746811
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    ||||||||||||| ||| |||||||||| |||| ||| |||||||||||||        ||||||||| ||||| |||||| | |||||||| |||||||    
T  14746949 ggtggattctagg-tgagggtccaattaagtccctcatcggtggaccacgaaaaaaacaccgttagattaaatacatggttcaaatttattcgaattaaa 14746851  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcct 380  Q
    | ||  ||||||||||| ||||||||||||||||||||||    
T  14746850 aatggaaacatatacaactactcacattcaatcctatcct 14746811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 43454210 - 43454103
Alignment:
Q  240 cggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaa 339  Q
    |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||       ||| | |||||||||||||||| ||||||||||||||| |    
T  43454210 cggtggattctagggtgagggtccaattaggtccctcacctgtggaccacgag-aaaacaccgatggataaaatagatggttcagatttattcaaattca 43454112  T
Q  340 aagtgagaa 348  Q
    ||| |||||    
T  43454111 aagagagaa 43454103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 382
Target Start/End: Complemental strand, 42020934 - 42020793
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    |||| |||||||||||| ||||||||||||||  || |||||||| |||||        ||  ||||| |||||||||||| ||||||||| |||  ||     
T  42020934 ggtgaattctagggtgagggtccaattaggtctctcgccggtggatcacgaaaaaaataccaatagattaaatagatggttcagatttattaaaagcaat 42020835  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcctaa 382  Q
    ||||  ||||| ||||| ||||||||||||||||||||||||    
T  42020834 agtgtaaacatgtacaactactcacattcaatcctatcctaa 42020793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 380
Target Start/End: Original strand, 14746041 - 14746180
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    ||||||||||||||||| ||||||||||  ||| || ||||||||||||||        ||  ||||| |||||||||| | ||||||||| ||||||||    
T  14746041 ggtggattctagggtgagggtccaattaaatccctccccggtggaccacgaaaaaaacgccactagatgaaatagatggatcagatttatttaaattaaa 14746140  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcct 380  Q
    | ||  |||||||||   |||||||||| |||| ||||||    
T  14746141 aatggaaacatatacggctactcacatttaatcttatcct 14746180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 373
Target Start/End: Original strand, 35982554 - 35982627
Alignment:
Q  300 ccgttagataaaatagatggttaagatttattcaaattaaaagtgagaacatatacaattactcacattcaatc 373  Q
    ||||||||| ||||| |||||| |||||||||| |||||||| |   ||||||||||| |||||||||||||||    
T  35982554 ccgttagattaaatacatggttcagatttattcgaattaaaaatagaaacatatacaactactcacattcaatc 35982627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 15287567 - 15287615
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccac 289  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctcaccggtggaccac 15287615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 16076210 - 16076261
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgag 292  Q
    ||||||||||||||||| ||||||||||||||| |||||  |||||||||||    
T  16076210 ggtggattctagggtgagggtccaattaggtccctcaccaatggaccacgag 16076261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 41419667 - 41419617
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacga 291  Q
    |||||||||||| |||| || |||||||||||| |||||||||||||||||    
T  41419667 ggtggattctagtgtgaggggccaattaggtccctcaccggtggaccacga 41419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 54308966 - 54309026
Alignment:
Q  331 tcaaattaaaagtgagaacatatacaattactcacattcaatcctatcctaacattgtttc 391  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||| |||| ||| || |||||    
T  54308966 tcaaattaaaattgagaacatgtacaactactcacattcaatcatatcttaaaatggtttc 54309026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 41418822 - 41418869
Alignment:
Q  303 ttagataaaatagatggttaagatttattcaaattaaaagtgagaacat 351  Q
    |||||| ||||| |||||| |||||||||||||||||||| ||||||||    
T  41418822 ttagattaaataaatggttcagatttattcaaattaaaag-gagaacat 41418869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 241 - 396
Target Start/End: Complemental strand, 36403073 - 36402918
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||    
T  36403073 ggtggattctagagtgagggtccaattaggtccctcaccggtggaccacgagaaaaacacagttagataaaatagatggttaagatttattcaaattaaa 36402974  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcctaacattgtttccacct 396  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  36402973 agtgagaacatatacaattactcatattcaatcctatcctaacatggtttccacct 36402918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 241 - 360
Target Start/End: Complemental strand, 26132181 - 26132062
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    |||||||| || ||||| ||||||||||||||| |||| |||||||||||||       |||||||||||||||||||||||||||||||| ||||||||    
T  26132181 ggtggattttaaggtgagggtccaattaggtccctcactggtggaccacgagaaaaacaccgttagataaaatagatggttaagatttattgaaattaaa 26132082  T
Q  341 agtgagaacatatacaatta 360  Q
    ||||||||||||||||||||    
T  26132081 agtgagaacatatacaatta 26132062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 10331470 - 10331596
Alignment:
Q  245 gattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaaagtg 344  Q
    |||| |||||||| ||||||||||||||  ||| ||||||||||||||       | ||||||| |||||||||||| |||||||||| |||||||| |     
T  10331470 gattatagggtgagggtccaattaggtctctcatcggtggaccacgagaaaaaaactgttagatgaaatagatggttcagatttattc-aattaaaaata 10331568  T
Q  345 agaacatatacaattactcacattcaat 372  Q
    ||||||| |||||||||| |||||||||    
T  10331569 agaacatgtacaattactgacattcaat 10331596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 379
Target Start/End: Complemental strand, 10333674 - 10333542
Alignment:
Q  246 attctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaaagtga 345  Q
    |||||| ||||| ||||||||||||||| ||||| ||||||||||||       | | || ||||||||||||||| ||||||||| ||||||||||||     
T  10333674 attctaaggtgagggtccaattaggtccctcaccagtggaccacgagaaaaca-cagctaaataaaatagatggtttagatttatttaaattaaaagtgg 10333576  T
Q  346 gaacatatacaattactcacattcaatcctatcc 379  Q
    ||| ||||||||  ||| ||||||||| ||||||    
T  10333575 gaatatatacaagcacttacattcaattctatcc 10333542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 5434032 - 5434082
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacga 291  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  5434032 ggtggattctagggtgagggtccaattaagtccttcaccggtggaccacga 5434082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 351
Target Start/End: Original strand, 44376641 - 44376752
Alignment:
Q  239 acggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaatta 338  Q
    |||||||||||||||| || |||||||||| |||| ||| |||||||||||||        ||  || || |||||||||||| ||||||||||||||||    
T  44376641 acggtggattctagggcgagggtccaattacgtccctcatcggtggaccacgaaaaaaataccaataaattaaatagatggttcagatttattcaaatta 44376740  T
Q  339 aaagtgagaacat 351  Q
    |||| ||||||||    
T  44376741 aaag-gagaacat 44376752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 36402201 - 36402251
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacga 291  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||||||||    
T  36402201 ggtggattttagggtgagggtccaattaggtcccacaccggtggaccacga 36402251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 26847097 - 26847146
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacg 290  Q
    ||||||||||||||||| |||||||||| |||| ||||||||| ||||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccacg 26847146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 241 - 396
Target Start/End: Complemental strand, 13416383 - 13416228
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    ||||||||||||| ||| ||||||||||||||| || |||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||    
T  13416383 ggtggattctaggatgagggtccaattaggtccctcgccggtggaccacgagaaaaacaccgttagataaaatagatggttaagatatattcaaattaaa 13416284  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcctaacattgtttccacct 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13416283 agtgagaacatatacaattactcacattcaatcctatcctaacatggtttccacct 13416228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 239 - 396
Target Start/End: Original strand, 5490509 - 5490665
Alignment:
Q  239 acggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaatta 338  Q
    ||||||||||||||| ||| ||| ||||||||||  ||| ||||||||||||||       |||||| ||||||||||||||||||||||||||||||||    
T  5490509 acggtggattctagg-tgagggttcaattaggtctctcatcggtggaccacgagaaaaacaccgttaaataaaatagatggttaagatttattcaaatta 5490607  T
Q  339 aaagtgagaacatatacaattactcacattcaatcctatcctaacattgtttccacct 396  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5490608 aaagtaagaacatatacaattactcacattcaatcctatcctaacatggtttccacct 5490665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 373
Target Start/End: Original strand, 31109236 - 31109371
Alignment:
Q  238 tacggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaatt 337  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| |||||       ||  ||||| ||| |  ||||| ||||||||| |||||    
T  31109236 tacggtggattctagggtgagggtccaattaggtccctcaccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaatt 31109335  T
Q  338 aaaagtgagaacatatacaattactcacattcaatc 373  Q
    ||||||| |||||| || |  | |||||||||||||    
T  31109336 aaaagtgggaacatgtagagctgctcacattcaatc 31109371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 31116732 - 31116681
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgag 292  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||| |||||    
T  31116732 ggtggattctagggtgagggtccaattaggtccctcaccggtggactacgag 31116681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 5491381 - 5491334
Alignment:
Q  244 ggattctagggtgaaggtccaattaggtccttcaccggtggaccacga 291  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  5491381 ggattctaggatgagggtccaattaggtccctcaccggtggaccacga 5491334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 26240919 - 26240872
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggacca 288  Q
    ||||||||||||||||| ||| |||||| |||| ||||||||||||||    
T  26240919 ggtggattctagggtgagggttcaattaagtccctcaccggtggacca 26240872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 241 - 396
Target Start/End: Complemental strand, 24874626 - 24874471
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    ||||||||||||||||| ||| ||||||||||| ||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  24874626 ggtggattctagggtgagggttcaattaggtccctcatcggtggaccacgagaaaaataccgttagataaaatagatggttaagatttattcaaattaaa 24874527  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcctaacattgtttccacct 396  Q
     ||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||    
T  24874526 tgtgagaatatatacaattactcatattcaatcctatcctaacatggtttccacct 24874471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 238 - 380
Target Start/End: Original strand, 767133 - 767275
Alignment:
Q  238 tacggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaatt 337  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||||| || ||        ||||||||| ||||| |||||| |||||||||| ||||    
T  767133 tacggtggattctagggtgagggtccaattaagtccctcaccggtggatcatgaaaaaaacaccgttagattaaatacatggttcagatttattcgaatt 767232  T
Q  338 aaaagtgagaacatatacaattactcacattcaatcctatcct 380  Q
    |||| ||  ||||||||||| ||||||||||||||||||||||    
T  767233 aaaaatggaaacatatacaactactcacattcaatcctatcct 767275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 380
Target Start/End: Complemental strand, 768014 - 767875
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    |||||||| |||||||| |||||||||| |||| |||||||||||||||||        |   |||||||||||||||| | || |||||| ||||||||    
T  768014 ggtggattttagggtgagggtccaattaagtccctcaccggtggaccacgaaaaaaatacaagtagataaaatagatggatcaggtttatttaaattaaa 767915  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcct 380  Q
    | ||| ||||||||||| |||| ||||| |||| ||||||    
T  767914 aatgaaaacatatacaactacttacatttaatcttatcct 767875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 41965825 - 41965775
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacga 291  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctcaccggtggaccacga 41965775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 24873751 - 24873861
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    ||||||||||||||||| ||||||||||||||| ||| | |||||||| ||        ||  ||||| |||||  ||||| ||||||||||||||||||    
T  24873751 ggtggattctagggtgagggtccaattaggtccctcatcagtggaccatgaaaaaaacaccaatagattaaataagtggtttagatttattcaaattaaa 24873850  T
Q  341 agtgagaacat 351  Q
    || ||||||||    
T  24873851 agggagaacat 24873861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 382
Target Start/End: Complemental strand, 27918660 - 27918516
Alignment:
Q  239 acggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnn-ccgttagataaaatagatggttaagatttattcaaatt 337  Q
    |||||| ||| |||| ||| ||||||||||||||| ||||||||||| |||||         ||  ||||| |||||||||||| | ||||||| |||      
T  27918660 acggtgaattttaggatgagggtccaattaggtccctcaccggtggatcacgaaaaaaaataccaatagattaaatagatggttcatatttattaaaagc 27918561  T
Q  338 aaaagtgagaacatatacaattactcacattcaatcctatcctaa 382  Q
    || ||||| || || ||||| ||||||||||||||||||||||||    
T  27918560 aatagtgaaaatatgtacaactactcacattcaatcctatcctaa 27918516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 27917764 - 27917834
Alignment:
Q  310 aaatagatggttaagatttattcaaattaaaagtgagaacatatacaattactcacattcaatcctatcct 380  Q
    ||||| ||| || ||||||||||||||||||| |  |||||||||||| || |||||||||||| ||||||    
T  27917764 aaatacatgcttcagatttattcaaattaaaaataggaacatatacaactattcacattcaatcttatcct 27917834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 21975693 - 21975771
Alignment:
Q  243 tggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggtt 321  Q
    ||||||||| || || |||| |||||||||| ||||||||||||||| ||       ||||||||||||||||||||||    
T  21975693 tggattctatggcgagggtctaattaggtccctcaccggtggaccacaagaaaaacaccgttagataaaatagatggtt 21975771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 18569067 - 18569020
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggacca 288  Q
    ||||||||||||||||||||||| ||||  ||| ||||||||||||||    
T  18569067 ggtggattctagggtgaaggtcctattaaatccctcaccggtggacca 18569020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 18652891 - 18652938
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggacca 288  Q
    ||||||||||||||||||||||| ||||  ||| ||||||||||||||    
T  18652891 ggtggattctagggtgaaggtcctattaaatccctcaccggtggacca 18652938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 41965112 - 41965162
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacga 291  Q
    ||||||||||||||||| |||||||||| |||| |||  ||||||||||||    
T  41965112 ggtggattctagggtgagggtccaattaagtccctcattggtggaccacga 41965162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 42817798 - 42817846
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccac 289  Q
    |||| |||||||||||| |||||||||| |||| ||| |||||||||||    
T  42817798 ggtgaattctagggtgatggtccaattaagtccctcatcggtggaccac 42817846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 241 - 396
Target Start/End: Complemental strand, 21281209 - 21281054
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    ||||||||||||||||| ||||||||||| ||| ||| ||||||||||||||       |||||||||||||||||||||||| ||||||||||||||||    
T  21281209 ggtggattctagggtgagggtccaattagatccctcatcggtggaccacgagaaaaacaccgttagataaaatagatggttaaaatttattcaaattaaa 21281110  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcctaacattgtttccacct 396  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  21281109 agtgagaacatatacaattacacacattcaatcttatcctaacatggtttccacct 21281054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 391
Target Start/End: Original strand, 45140454 - 45140604
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    |||||||||||||||||||||||||| | |||||||| ||| |||| |||||       |   || || |||||||||||| ||||||||||||||||||    
T  45140454 ggtggattctagggtgaaggtccaatcaagtccttcatcggcggacaacgagaaaaacacttatatatgaaatagatggttcagatttattcaaattaaa 45140553  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcctaacattgtttc 391  Q
    |||| |||||| ||||| |||||||||| ||||||||||||| || |||||    
T  45140554 agtgggaacatgtacaactactcacatttaatcctatcctaaaatggtttc 45140604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 372
Target Start/End: Complemental strand, 45141191 - 45141060
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    ||||||||||||||||| ||||||||||| ||| ||| || ||||||| |||        || ||||| |||||||||||| ||||||||||| ||||||    
T  45141191 ggtggattctagggtgagggtccaattagatccctcatcgatggaccatgagaaaaacaacgatagatgaaatagatggttcagatttattcagattaaa 45141092  T
Q  341 agtgagaacatatacaattactcacattcaat 372  Q
    || || ||||| | ||| |  |||||||||||    
T  45141091 agagataacatgtgcaacttttcacattcaat 45141060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 53778461 - 53778413
Alignment:
Q  243 tggattctagggtgaaggtccaattaggtccttcaccggtggaccacga 291  Q
    ||||||||||||||| |||||| ||| |||| |||||||||||||||||    
T  53778461 tggattctagggtgagggtccatttaagtccctcaccggtggaccacga 53778413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 42792775 - 42792819
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtgga 285  Q
    ||||||||||||||||| |||||||||| |||| |||||| ||||    
T  42792775 ggtggattctagggtgagggtccaattaagtccctcaccgatgga 42792819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 264 - 396
Target Start/End: Complemental strand, 286035 - 285903
Alignment:
Q  264 aattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaaagtgagaacatatacaattactc 363  Q
    |||||||||| | ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  286035 aattaggtcccttaccggtggaccacgagaaaaacaccgttagataaaatagatggttaagatttattcaaattaaaagtgagaacatatacaattactc 285936  T
Q  364 acattcaatcctatcctaacattgtttccacct 396  Q
    |||||||||||||||||||||| ||||||||||    
T  285935 acattcaatcctatcctaacatggtttccacct 285903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 285183 - 285228
Alignment:
Q  246 attctagggtgaaggtccaattaggtccttcaccggtggaccacga 291  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||    
T  285183 attctagggtgagggtccaattaggtcccttaccggtggaccacga 285228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 241 - 382
Target Start/End: Original strand, 10965230 - 10965371
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    |||||||| ||||||||||||||||||| |||  ||| |||||||||| |||       || |||||| |||||||||||| | ||||||| ||||||||    
T  10965230 ggtggattttagggtgaaggtccaattaagtctctcatcggtggaccatgagaaaaataccattagattaaatagatggttcaaatttatttaaattaaa 10965329  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcctaa 382  Q
    ||||  ||||| ||||| ||||||||||||||||||||||||    
T  10965330 agtggaaacatgtacaactactcacattcaatcctatcctaa 10965371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 241 - 368
Target Start/End: Original strand, 2138477 - 2138603
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||||||       ||  || || |||||||||||| ||||||||||||||||||    
T  2138477 ggtgaattctagggtgagggtccaattaggtccctcaccggtggaccacgagaaaaataccaataaattaaatagatggttgagatttattcaaattaaa 2138576  T
Q  341 agtgagaacatatacaattactcacatt 368  Q
    ||||| ||||| ||||| ||||||||||    
T  2138577 agtga-aacatgtacaactactcacatt 2138603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 382
Target Start/End: Original strand, 709322 - 709462
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    |||| |||||||| ||| ||||||||||| ||| |||||| |||| ||||||       ||  ||||| |||||||||||| ||||||||||||||||||    
T  709322 ggtgaattctaggatgagggtccaattagatccctcaccgatggatcacgagaaaaataccaatagattaaatagatggttcagatttattcaaattaaa 709421  T
Q  341 agtgagaacatatacaattactcacattcaatcctatcctaa 382  Q
    | ||| || || ||||| ||||||||||||||||||||||||    
T  709422 aatga-aatatgtacaactactcacattcaatcctatcctaa 709462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 10966428 - 10966377
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgag 292  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10966428 ggtggattctagggtgaaggtccaattaggtccctcaccggtggaccacgag 10966377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 8113373 - 8113482
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    |||||||||||||| || ||||||||||||||||||| | |||||||||||        ||  || || |||||||||||| | ||||||||||||||||    
T  8113373 ggtggattctagggcgagggtccaattaggtccttcatctgtggaccacgaaaataataccaataaattaaatagatggttcaaatttattcaaattaaa 8113472  T
Q  341 agtgagaacat 351  Q
    || ||||||||    
T  8113473 ag-gagaacat 8113482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 7754012 - 7754119
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacgagnnnnnnnccgttagataaaatagatggttaagatttattcaaattaaa 340  Q
    ||||||||||||||||| ||||||||||||||| || |||||||| |||||        ||  || ||||||||||| ||| ||||||||||||||||||    
T  7754012 ggtggattctagggtgagggtccaattaggtccctccccggtggatcacgaaaaaaataccaataaataaaatagatagttcagatttattcaaattaaa 7754111  T
Q  341 agtgagaa 348  Q
    || |||||    
T  7754112 agggagaa 7754119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 7755015 - 7754968
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggacca 288  Q
    ||||||||||||||||| ||  |||||| |||||||||||||||||||    
T  7755015 ggtggattctagggtgagggatcaattaagtccttcaccggtggacca 7754968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 127783 - 127741
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtg 283  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||    
T  127783 ggtggattctagggtgagggttcaattaagtccttcaccggtg 127741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 4716921 - 4716871
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacga 291  Q
    ||||||||||||||||| ||||||||||  | |||||| ||||||||||||    
T  4716921 ggtggattctagggtgagggtccaattaaattcttcactggtggaccacga 4716871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 44296860 - 44296908
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccac 289  Q
    |||| |||||||||||| |||||||||| |||| |||| ||||||||||    
T  44296860 ggtgaattctagggtgagggtccaattaagtccctcactggtggaccac 44296908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 23253534 - 23253485
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccacg 290  Q
    ||||||||||||||||| |||||||||| |||| ||||||||| ||||||    
T  23253534 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccacg 23253485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 39466885 - 39466933
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccac 289  Q
    |||| |||||||||||| |||||||||| |||| |||||||||||||||    
T  39466885 ggtgaattctagggtgagggtccaattaagtccctcaccggtggaccac 39466933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 24565572 - 24565620
Alignment:
Q  240 cggtggattctagggtgaaggtccaattaggtccttcaccggtggacca 288  Q
    |||||||||||||||||| ||| ||||||  ||| ||||||||||||||    
T  24565572 cggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 24606608 - 24606656
Alignment:
Q  240 cggtggattctagggtgaaggtccaattaggtccttcaccggtggacca 288  Q
    |||||||||||||||||| ||| ||||||  ||| ||||||||||||||    
T  24606608 cggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 39937954 - 39937906
Alignment:
Q  241 ggtggattctagggtgaaggtccaattaggtccttcaccggtggaccac 289  Q
    ||||||||||||||||| ||| || ||| |||| |||||||||||||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcaccggtggaccac 39937906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University