View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_71 (Length: 238)
Name: NF10187_low_71
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_71 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 16608871 - 16609093
Alignment:
| Q |
16 |
gcaagtcttgttaataccatcaccaataagcaagatattcttcttatgttttgtaatagtaacatattcctcatatactccttctctgacatatataaga |
115 |
Q |
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| T |
16608871 |
gcaagtcttgttaataccatcaccaataagcaagatattcttcttatgttttgtaatagtaacatattcctcatatactccttctctgacatatataaga |
16608970 |
T |
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| Q |
116 |
aaatagccatcttctgccttcaaattatgaggtgcagcatcaatggcttccccaatagaagtgaagttttctgtgccatcaagactcacaataacatatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16608971 |
aaatagccatcttctgccttcaaattatgaggtgcagcatcaatggcttccccaatagaagtgaagttttctgtgccatcaagactcacaataacatatt |
16609070 |
T |
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| Q |
216 |
ctttcagtaaaattcctctattt |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
16609071 |
ctttcagtaaaattcctctattt |
16609093 |
T |
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