View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_75 (Length: 231)
Name: NF10187_low_75
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_75 |
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Alignment Details
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 19248019 - 19247953
Alignment:
| Q |
151 |
tgaattaccaacctgcatttcatgtgattgcatccttcagacttttcaataaactgtttacaaagtg |
217 |
Q |
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| T |
19248019 |
tgaattaccaacctgcatttcatgtgattgcatccttcagacttttcaataaactgtttacaaagtg |
19247953 |
T |
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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 19248135 - 19248069
Alignment:
| Q |
30 |
aaatgaaaccttaaataagatttattgattaatcaagaattcaaagacatacacattcaatgatttt |
96 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19248135 |
aaatgaaaccttaaataagattaattgattaatcaagaattcaaagacatacacattcaatgatttt |
19248069 |
T |
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