View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_76 (Length: 229)
Name: NF10187_low_76
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 48618051 - 48617856
Alignment:
| Q |
11 |
gagaagcaaagggttttccaacaagtttgagatgttctatgtagcctaaaagatttcctctaagaggatgatcatcttctaaaccatcatctaagaactc |
110 |
Q |
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| T |
48618051 |
gagaaacaaagggttttccaacaagtttgagatgttctatgtagcctaaaagatttcctctaagaggatgatcatcttctaaaccatcatctaagaactc |
48617952 |
T |
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| Q |
111 |
aaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatgttgttaacagttcttatgtctttgccagctttctctgttgttatgaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48617951 |
aaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatattgttaacagttcttatgtctttgccagctttctctgttgtgatgaa |
48617856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 48653404 - 48653599
Alignment:
| Q |
11 |
gagaagcaaagggttttccaacaagtttgagatgttctatgtagcctaaaagatttcctctaagaggatgatcatcttctaaaccatcatctaagaactc |
110 |
Q |
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||||| ||||||||||||||||||||||||| ||| |||||||||| || || |||||||| ||||| |||||||||||||| |||||| |||||||| |
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| T |
48653404 |
gagaaacaaagggttttccaacaagtttgagctgtgctatgtagccagtaatatctcctctaataggatcatcatcttctaaacaatcatcaaagaactc |
48653503 |
T |
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| Q |
111 |
aaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatgttgttaacagttcttatgtctttgccagctttctctgttgttatgaa |
206 |
Q |
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| T |
48653504 |
aaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttcttatgtcttttccagctctttctgttgtgatgaa |
48653599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 11547526 - 11547710
Alignment:
| Q |
22 |
ggttttccaacaagtttgagatgttctatgtagcctaaaagatttcctctaagaggatgatcatcttctaaaccatcatctaagaactcaaaagtaagag |
121 |
Q |
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| T |
11547526 |
ggtttcccaaaaagttttagttgttctatgtagccacaaagatttgccctaataggatcatcatcttgtaaaccatcatcaaagaactcaaaagtgagag |
11547625 |
T |
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| Q |
122 |
aaccatcaccaattgaagtgagtgatttttcaatgatgttgttaacagttcttatgtctttgccagctttctctgttgttatgaa |
206 |
Q |
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|||||| ||| ||||| |||| ||||||||||| |||||||||||| ||| |||||||||||||||||||| |||||| ||||| |
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| T |
11547626 |
aaccattacctattgatgtgactgatttttcaacgatgttgttaaccgtttgtatgtctttgccagctttctttgttgtgatgaa |
11547710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 48585690 - 48585800
Alignment:
| Q |
90 |
taaaccatcatctaagaactcaaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatgttgttaacagttcttatgtctttgccagct |
189 |
Q |
| |
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|||||||||||| |||||||| |||| | || |||||||||||||| ||| | |||| ||||||||||||||| ||| || |||| ||||||||| |
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| T |
48585690 |
taaaccatcatcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagcc |
48585789 |
T |
|
| Q |
190 |
ttctctgttgt |
200 |
Q |
| |
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|||||||||| |
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| T |
48585790 |
gtctctgttgt |
48585800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 48640263 - 48640373
Alignment:
| Q |
90 |
taaaccatcatctaagaactcaaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatgttgttaacagttcttatgtctttgccagct |
189 |
Q |
| |
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||||||||| || |||||||| |||| | || |||||||||||||| ||| | |||| ||||||||||||||| ||| || |||| ||||||||| |
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| T |
48640263 |
taaaccatcgtcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagcc |
48640362 |
T |
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| Q |
190 |
ttctctgttgt |
200 |
Q |
| |
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|||||||||| |
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| T |
48640363 |
gtctctgttgt |
48640373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 19665342 - 19665212
Alignment:
| Q |
76 |
ggatgatcatcttctaaaccatcatctaagaactcaaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatgttgttaacagttctta |
175 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| | ||| | |||||||||||||| |||| |||||||||||| | | ||||||||||||||||| | |
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| T |
19665342 |
ggatcatcatcttctaaaccatcatcaaagaagtggaaaatgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaacagtttgca |
19665243 |
T |
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| Q |
176 |
tgtctttgccagctttctctgttgttatgaa |
206 |
Q |
| |
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|||||||||||||||||||||| || ||||| |
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| T |
19665242 |
tgtctttgccagctttctctgtagtgatgaa |
19665212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 27224319 - 27224449
Alignment:
| Q |
76 |
ggatgatcatcttctaaaccatcatctaagaactcaaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatgttgttaacagttctta |
175 |
Q |
| |
|
|||| ||||||| |||||| ||||| ||||||| ||| || |||||||||| ||||| || | ||| | |||||||| |||| |||||||||||||| | |
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| T |
27224319 |
ggatcatcatctgataaaccgtcatcaaagaactgaaatgtgagagaaccattaccaactggaatgactaatttttcagtgatattgttaacagttctca |
27224418 |
T |
|
| Q |
176 |
tgtctttgccagctttctctgttgttatgaa |
206 |
Q |
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||||||||||||||||||||||| ||||| |
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| T |
27224419 |
attctttgccagctttctctgttgtgatgaa |
27224449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 27228522 - 27228652
Alignment:
| Q |
76 |
ggatgatcatcttctaaaccatcatctaagaactcaaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatgttgttaacagttctta |
175 |
Q |
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|||| ||||||| |||||| || || |||||||| || | |||||||||| ||||| || | ||| |||||| ||||||||||||||||||||||| | |
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| T |
27228522 |
ggatcatcatctgataaaccgtcttcaaagaactcgaatgcgagagaaccattaccaactggaatgactgatttatcaatgatgttgttaacagttctca |
27228621 |
T |
|
| Q |
176 |
tgtctttgccagctttctctgttgttatgaa |
206 |
Q |
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||| ||||||||||||| ||||| ||||| |
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| T |
27228622 |
actctctgccagctttctcagttgtgatgaa |
27228652 |
T |
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