View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_78 (Length: 229)

Name: NF10187_low_78
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_78
NF10187_low_78
[»] chr8 (18 HSPs)
chr8 (1-148)||(16609094-16609242)
chr8 (198-229)||(44580613-44580644)
chr8 (200-229)||(2152249-2152278)
chr8 (200-229)||(12802610-12802639)
chr8 (200-229)||(18111984-18112013)
chr8 (200-229)||(23487063-23487092)
chr8 (200-229)||(23688174-23688203)
chr8 (201-229)||(5162304-5162332)
chr8 (201-229)||(6050564-6050592)
chr8 (197-229)||(8797024-8797056)
chr8 (201-229)||(17069853-17069881)
chr8 (201-229)||(17578392-17578420)
chr8 (201-229)||(18641389-18641417)
chr8 (200-228)||(36408414-36408442)
chr8 (200-228)||(40784890-40784918)
chr8 (199-227)||(44021006-44021034)
chr8 (201-229)||(44888680-44888708)
chr8 (201-229)||(45283801-45283829)
[»] chr3 (18 HSPs)
chr3 (197-229)||(46845501-46845533)
chr3 (200-229)||(4759360-4759389)
chr3 (200-229)||(10015798-10015827)
chr3 (200-229)||(12906422-12906451)
chr3 (200-229)||(19897845-19897874)
chr3 (200-229)||(24087344-24087373)
chr3 (200-229)||(28875260-28875289)
chr3 (200-229)||(41392889-41392918)
chr3 (200-229)||(42801520-42801549)
chr3 (200-229)||(48902717-48902746)
chr3 (200-229)||(48904272-48904301)
chr3 (200-229)||(50433398-50433427)
chr3 (201-229)||(4759088-4759116)
chr3 (201-229)||(8321925-8321953)
chr3 (201-229)||(15996782-15996810)
chr3 (200-228)||(17699041-17699069)
chr3 (193-229)||(43978152-43978188)
chr3 (201-229)||(45513646-45513674)
[»] chr5 (11 HSPs)
chr5 (198-229)||(20142268-20142299)
chr5 (200-229)||(3028012-3028041)
chr5 (200-229)||(7940451-7940480)
chr5 (200-229)||(8949811-8949840)
chr5 (200-229)||(14435829-14435858)
chr5 (200-229)||(23260147-23260176)
chr5 (201-229)||(4976299-4976327)
chr5 (201-229)||(19571948-19571976)
chr5 (201-229)||(23286483-23286511)
chr5 (200-228)||(32964132-32964160)
chr5 (201-229)||(43060420-43060448)
[»] chr7 (11 HSPs)
chr7 (199-229)||(1574717-1574747)
chr7 (200-229)||(2290025-2290054)
chr7 (200-229)||(27813495-27813524)
chr7 (200-229)||(33381582-33381611)
chr7 (200-229)||(34012526-34012555)
chr7 (200-229)||(42541868-42541897)
chr7 (200-228)||(6799556-6799584)
chr7 (201-229)||(31581677-31581705)
chr7 (201-229)||(32118172-32118200)
chr7 (200-228)||(35888311-35888339)
chr7 (200-228)||(46415015-46415043)
[»] chr6 (11 HSPs)
chr6 (199-229)||(13901639-13901669)
chr6 (200-229)||(402630-402659)
chr6 (200-229)||(13321335-13321364)
chr6 (200-229)||(15498628-15498657)
chr6 (200-229)||(16122523-16122552)
chr6 (200-229)||(23604459-23604488)
chr6 (200-229)||(25045652-25045681)
chr6 (200-229)||(34915552-34915581)
chr6 (201-229)||(2090658-2090686)
chr6 (201-229)||(13866593-13866621)
chr6 (201-229)||(31091445-31091473)
[»] chr4 (20 HSPs)
chr4 (195-229)||(18872711-18872745)
chr4 (199-229)||(28501395-28501425)
chr4 (200-229)||(4415964-4415993)
chr4 (200-229)||(20455190-20455219)
chr4 (200-229)||(21265219-21265248)
chr4 (200-229)||(29508597-29508626)
chr4 (200-229)||(30523763-30523792)
chr4 (200-229)||(32899227-32899256)
chr4 (200-229)||(46949991-46950020)
chr4 (200-229)||(49793090-49793119)
chr4 (200-229)||(56432517-56432546)
chr4 (201-229)||(7698478-7698506)
chr4 (201-229)||(25124255-25124283)
chr4 (201-229)||(29520173-29520201)
chr4 (201-229)||(31937076-31937104)
chr4 (201-229)||(39670995-39671023)
chr4 (200-228)||(39797433-39797461)
chr4 (201-229)||(49373702-49373730)
chr4 (201-229)||(53564365-53564393)
chr4 (201-229)||(55563136-55563164)
[»] scaffold0237 (1 HSPs)
scaffold0237 (200-229)||(6618-6647)
[»] scaffold0163 (1 HSPs)
scaffold0163 (200-229)||(1455-1484)
[»] scaffold0020 (1 HSPs)
scaffold0020 (200-229)||(164213-164242)
[»] chr2 (18 HSPs)
chr2 (200-229)||(2199977-2200006)
chr2 (200-229)||(12890217-12890246)
chr2 (200-229)||(23083514-23083543)
chr2 (200-229)||(26322302-26322331)
chr2 (199-228)||(29830764-29830793)
chr2 (200-229)||(31751068-31751097)
chr2 (200-229)||(41422511-41422540)
chr2 (200-229)||(41494631-41494660)
chr2 (201-229)||(2060316-2060344)
chr2 (201-229)||(2200249-2200277)
chr2 (201-229)||(3095299-3095327)
chr2 (201-229)||(7116308-7116336)
chr2 (201-229)||(8912883-8912911)
chr2 (201-229)||(13215829-13215857)
chr2 (201-229)||(18374713-18374741)
chr2 (201-229)||(24345417-24345445)
chr2 (201-229)||(24345687-24345715)
chr2 (201-229)||(28566151-28566179)
[»] chr1 (18 HSPs)
chr1 (200-229)||(5765999-5766028)
chr1 (200-229)||(7763758-7763787)
chr1 (200-229)||(9413334-9413363)
chr1 (200-229)||(17483732-17483761)
chr1 (200-229)||(25283870-25283899)
chr1 (200-229)||(25509208-25509237)
chr1 (200-229)||(27037268-27037297)
chr1 (200-229)||(28885841-28885870)
chr1 (200-229)||(42276170-42276199)
chr1 (199-228)||(50937777-50937806)
chr1 (201-229)||(4280135-4280163)
chr1 (201-229)||(21631116-21631144)
chr1 (201-229)||(25227304-25227332)
chr1 (201-229)||(27037539-27037567)
chr1 (200-228)||(28886114-28886142)
chr1 (201-229)||(38613745-38613773)
chr1 (201-229)||(41317593-41317621)
chr1 (201-229)||(43456630-43456658)
[»] scaffold0674 (1 HSPs)
scaffold0674 (201-229)||(5151-5179)
[»] scaffold0549 (1 HSPs)
scaffold0549 (201-229)||(10191-10219)
[»] scaffold0240 (2 HSPs)
scaffold0240 (201-229)||(18497-18525)
scaffold0240 (201-229)||(18765-18793)
[»] scaffold0161 (1 HSPs)
scaffold0161 (201-229)||(3438-3466)
[»] scaffold0107 (1 HSPs)
scaffold0107 (201-229)||(48654-48682)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 16609094 - 16609242
Alignment:
Q  1 tcgctttctttaagaatcccttcgtgtcttaaacagtttgaggagttattgctgcaactgtgttttgtgtgaagaagctgcaacaagtaatgttacaatt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16609094 tcgctttctttaagaatcctttcgtgtcttaaacagtttgaggagttattgctgcaactgtgttttgtgtgaagaagctgcaacaagtaatgttacaatt 16609193  T
Q  101 ttagactttcaaatttcaattaacaattttgactttat-aatgtataca 148  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16609194 ttagactttcaaatttcaattaacaattttgactttataaatgtataca 16609242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 229
Target Start/End: Original strand, 44580613 - 44580644
Alignment:
Q  198 agatactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||||    
T  44580613 agatactacctccgtccctaattataagaccc 44580644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 2152278 - 2152249
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  2152278 atactacctccgtccctaattataagaccc 2152249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 12802610 - 12802639
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  12802610 atactacctccgtccctaattataagaccc 12802639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 18112013 - 18111984
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  18112013 atactacctccgtccctaattataagaccc 18111984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 23487063 - 23487092
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  23487063 atactacctccgtccctaattataagaccc 23487092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 23688203 - 23688174
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  23688203 atactacctccgtccctaattataagaccc 23688174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 5162304 - 5162332
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  5162304 tactacctccgtccctaattataagaccc 5162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 6050592 - 6050564
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  6050592 tactacctccgtccctaattataagaccc 6050564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 8797024 - 8797056
Alignment:
Q  197 aagatactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||| ||||||||||||||||    
T  8797024 aagatactacctccgttcctaattataagaccc 8797056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 17069881 - 17069853
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  17069881 tactacctccgtccctaattataagaccc 17069853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 17578392 - 17578420
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  17578392 tactacctccgtccctaattataagaccc 17578420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 18641417 - 18641389
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  18641417 tactacctccgtccctaattataagaccc 18641389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 36408414 - 36408442
Alignment:
Q  200 atactacctccgtccctaattataagacc 228  Q
    |||||||||||||||||||||||||||||    
T  36408414 atactacctccgtccctaattataagacc 36408442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 40784890 - 40784918
Alignment:
Q  200 atactacctccgtccctaattataagacc 228  Q
    |||||||||||||||||||||||||||||    
T  40784890 atactacctccgtccctaattataagacc 40784918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 44021006 - 44021034
Alignment:
Q  199 gatactacctccgtccctaattataagac 227  Q
    |||||||||||||||||||||||||||||    
T  44021006 gatactacctccgtccctaattataagac 44021034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 44888680 - 44888708
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  44888680 tactacctccgtccctaattataagaccc 44888708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 45283829 - 45283801
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  45283829 tactacctccgtccctaattataagaccc 45283801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 46845533 - 46845501
Alignment:
Q  197 aagatactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||||||    
T  46845533 aagatactacctccgtccctaattataagaccc 46845501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 4759389 - 4759360
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  4759389 atactacctccgtccctaattataagaccc 4759360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 10015827 - 10015798
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  10015827 atactacctccgtccctaattataagaccc 10015798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 12906451 - 12906422
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  12906451 atactacctccgtccctaattataagaccc 12906422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 19897874 - 19897845
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  19897874 atactacctccgtccctaattataagaccc 19897845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 24087373 - 24087344
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  24087373 atactacctccgtccctaattataagaccc 24087344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 28875289 - 28875260
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  28875289 atactacctccgtccctaattataagaccc 28875260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 41392918 - 41392889
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  41392918 atactacctccgtccctaattataagaccc 41392889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 42801520 - 42801549
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  42801520 atactacctccgtccctaattataagaccc 42801549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 48902746 - 48902717
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  48902746 atactacctccgtccctaattataagaccc 48902717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 48904301 - 48904272
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  48904301 atactacctccgtccctaattataagaccc 48904272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 50433427 - 50433398
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  50433427 atactacctccgtccctaattataagaccc 50433398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 4759088 - 4759116
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  4759088 tactacctccgtccctaattataagaccc 4759116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 8321925 - 8321953
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  8321925 tactacctccgtccctaattataagaccc 8321953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 15996810 - 15996782
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  15996810 tactacctccgtccctaattataagaccc 15996782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 17699069 - 17699041
Alignment:
Q  200 atactacctccgtccctaattataagacc 228  Q
    |||||||||||||||||||||||||||||    
T  17699069 atactacctccgtccctaattataagacc 17699041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 43978152 - 43978188
Alignment:
Q  193 taagaagatactacctccgtccctaattataagaccc 229  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  43978152 taagatgatacttcctccgtccctaattataagaccc 43978188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 45513674 - 45513646
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  45513674 tactacctccgtccctaattataagaccc 45513646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 229
Target Start/End: Complemental strand, 20142299 - 20142268
Alignment:
Q  198 agatactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||||    
T  20142299 agatactacctccgtccctaattataagaccc 20142268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 3028012 - 3028041
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  3028012 atactacctccgtccctaattataagaccc 3028041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 7940451 - 7940480
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  7940451 atactacctccgtccctaattataagaccc 7940480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 8949811 - 8949840
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  8949811 atactacctccgtccctaattataagaccc 8949840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 14435829 - 14435858
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  14435829 atactacctccgtccctaattataagaccc 14435858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 23260176 - 23260147
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  23260176 atactacctccgtccctaattataagaccc 23260147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 4976327 - 4976299
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  4976327 tactacctccgtccctaattataagaccc 4976299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 19571976 - 19571948
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  19571976 tactacctccgtccctaattataagaccc 19571948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 23286511 - 23286483
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  23286511 tactacctccgtccctaattataagaccc 23286483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 32964132 - 32964160
Alignment:
Q  200 atactacctccgtccctaattataagacc 228  Q
    |||||||||||||||||||||||||||||    
T  32964132 atactacctccgtccctaattataagacc 32964160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 43060448 - 43060420
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  43060448 tactacctccgtccctaattataagaccc 43060420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Original strand, 1574717 - 1574747
Alignment:
Q  199 gatactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||||    
T  1574717 gatactacctccgtccctaattataagaccc 1574747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 2290054 - 2290025
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  2290054 atactacctccgtccctaattataagaccc 2290025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 27813495 - 27813524
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  27813495 atactacctccgtccctaattataagaccc 27813524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 33381611 - 33381582
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  33381611 atactacctccgtccctaattataagaccc 33381582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 34012555 - 34012526
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  34012555 atactacctccgtccctaattataagaccc 34012526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 42541897 - 42541868
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  42541897 atactacctccgtccctaattataagaccc 42541868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 6799584 - 6799556
Alignment:
Q  200 atactacctccgtccctaattataagacc 228  Q
    |||||||||||||||||||||||||||||    
T  6799584 atactacctccgtccctaattataagacc 6799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 31581677 - 31581705
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  31581677 tactacctccgtccctaattataagaccc 31581705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 32118200 - 32118172
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  32118200 tactacctccgtccctaattataagaccc 32118172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 35888311 - 35888339
Alignment:
Q  200 atactacctccgtccctaattataagacc 228  Q
    |||||||||||||||||||||||||||||    
T  35888311 atactacctccgtccctaattataagacc 35888339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 46415043 - 46415015
Alignment:
Q  200 atactacctccgtccctaattataagacc 228  Q
    |||||||||||||||||||||||||||||    
T  46415043 atactacctccgtccctaattataagacc 46415015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Original strand, 13901639 - 13901669
Alignment:
Q  199 gatactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||||    
T  13901639 gatactacctccgtccctaattataagaccc 13901669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 402659 - 402630
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  402659 atactacctccgtccctaattataagaccc 402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 13321364 - 13321335
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  13321364 atactacctccgtccctaattataagaccc 13321335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 15498628 - 15498657
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  15498628 atactacctccgtccctaattataagaccc 15498657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 16122552 - 16122523
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  16122552 atactacctccgtccctaattataagaccc 16122523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 23604459 - 23604488
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  23604459 atactacctccgtccctaattataagaccc 23604488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 25045681 - 25045652
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  25045681 atactacctccgtccctaattataagaccc 25045652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 34915581 - 34915552
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  34915581 atactacctccgtccctaattataagaccc 34915552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 2090658 - 2090686
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  2090658 tactacctccgtccctaattataagaccc 2090686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 13866593 - 13866621
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  13866593 tactacctccgtccctaattataagaccc 13866621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 31091445 - 31091473
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  31091445 tactacctccgtccctaattataagaccc 31091473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 18872711 - 18872745
Alignment:
Q  195 agaagatactacctccgtccctaattataagaccc 229  Q
    |||| ||||||||||||||||||||||||||||||    
T  18872711 agaatatactacctccgtccctaattataagaccc 18872745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 28501425 - 28501395
Alignment:
Q  199 gatactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||||    
T  28501425 gatactacctccgtccctaattataagaccc 28501395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 4415964 - 4415993
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  4415964 atactacctccgtccctaattataagaccc 4415993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 20455219 - 20455190
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  20455219 atactacctccgtccctaattataagaccc 20455190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 21265219 - 21265248
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  21265219 atactacctccgtccctaattataagaccc 21265248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 29508597 - 29508626
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  29508597 atactacctccgtccctaattataagaccc 29508626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 30523763 - 30523792
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  30523763 atactacctccgtccctaattataagaccc 30523792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 32899256 - 32899227
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  32899256 atactacctccgtccctaattataagaccc 32899227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 46949991 - 46950020
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  46949991 atactacctccgtccctaattataagaccc 46950020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 49793090 - 49793119
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  49793090 atactacctccgtccctaattataagaccc 49793119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 56432517 - 56432546
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  56432517 atactacctccgtccctaattataagaccc 56432546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 7698506 - 7698478
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  7698506 tactacctccgtccctaattataagaccc 7698478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 25124283 - 25124255
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  25124283 tactacctccgtccctaattataagaccc 25124255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 29520201 - 29520173
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  29520201 tactacctccgtccctaattataagaccc 29520173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 31937076 - 31937104
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  31937076 tactacctccgtccctaattataagaccc 31937104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 39671023 - 39670995
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  39671023 tactacctccgtccctaattataagaccc 39670995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 39797433 - 39797461
Alignment:
Q  200 atactacctccgtccctaattataagacc 228  Q
    |||||||||||||||||||||||||||||    
T  39797433 atactacctccgtccctaattataagacc 39797461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 49373730 - 49373702
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  49373730 tactacctccgtccctaattataagaccc 49373702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 53564393 - 53564365
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  53564393 tactacctccgtccctaattataagaccc 53564365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 55563164 - 55563136
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  55563164 tactacctccgtccctaattataagaccc 55563136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 6647 - 6618
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  6647 atactacctccgtccctaattataagaccc 6618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 1484 - 1455
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  1484 atactacctccgtccctaattataagaccc 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 164213 - 164242
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  164213 atactacctccgtccctaattataagaccc 164242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 2199977 - 2200006
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  2199977 atactacctccgtccctaattataagaccc 2200006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 12890246 - 12890217
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  12890246 atactacctccgtccctaattataagaccc 12890217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 23083514 - 23083543
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  23083514 atactacctccgtccctaattataagaccc 23083543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 26322331 - 26322302
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  26322331 atactacctccgtccctaattataagaccc 26322302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 228
Target Start/End: Complemental strand, 29830793 - 29830764
Alignment:
Q  199 gatactacctccgtccctaattataagacc 228  Q
    ||||||||||||||||||||||||||||||    
T  29830793 gatactacctccgtccctaattataagacc 29830764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 31751068 - 31751097
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  31751068 atactacctccgtccctaattataagaccc 31751097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 41422511 - 41422540
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  41422511 atactacctccgtccctaattataagaccc 41422540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 41494660 - 41494631
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  41494660 atactacctccgtccctaattataagaccc 41494631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 2060316 - 2060344
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  2060316 tactacctccgtccctaattataagaccc 2060344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 2200277 - 2200249
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  2200277 tactacctccgtccctaattataagaccc 2200249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 3095299 - 3095327
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  3095299 tactacctccgtccctaattataagaccc 3095327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 7116336 - 7116308
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  7116336 tactacctccgtccctaattataagaccc 7116308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 8912911 - 8912883
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  8912911 tactacctccgtccctaattataagaccc 8912883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 13215857 - 13215829
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  13215857 tactacctccgtccctaattataagaccc 13215829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 18374741 - 18374713
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  18374741 tactacctccgtccctaattataagaccc 18374713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 24345417 - 24345445
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  24345417 tactacctccgtccctaattataagaccc 24345445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 24345715 - 24345687
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  24345715 tactacctccgtccctaattataagaccc 24345687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 28566151 - 28566179
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  28566151 tactacctccgtccctaattataagaccc 28566179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 5766028 - 5765999
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  5766028 atactacctccgtccctaattataagaccc 5765999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 7763787 - 7763758
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  7763787 atactacctccgtccctaattataagaccc 7763758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 9413363 - 9413334
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  9413363 atactacctccgtccctaattataagaccc 9413334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 17483732 - 17483761
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  17483732 atactacctccgtccctaattataagaccc 17483761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 25283870 - 25283899
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  25283870 atactacctccgtccctaattataagaccc 25283899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 25509208 - 25509237
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  25509208 atactacctccgtccctaattataagaccc 25509237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 27037268 - 27037297
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  27037268 atactacctccgtccctaattataagaccc 27037297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 28885841 - 28885870
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  28885841 atactacctccgtccctaattataagaccc 28885870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 42276199 - 42276170
Alignment:
Q  200 atactacctccgtccctaattataagaccc 229  Q
    ||||||||||||||||||||||||||||||    
T  42276199 atactacctccgtccctaattataagaccc 42276170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 50937777 - 50937806
Alignment:
Q  199 gatactacctccgtccctaattataagacc 228  Q
    ||||||||||||||||||||||||||||||    
T  50937777 gatactacctccgtccctaattataagacc 50937806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 4280163 - 4280135
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  4280163 tactacctccgtccctaattataagaccc 4280135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 21631144 - 21631116
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  21631144 tactacctccgtccctaattataagaccc 21631116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 25227304 - 25227332
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  25227304 tactacctccgtccctaattataagaccc 25227332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 27037567 - 27037539
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  27037567 tactacctccgtccctaattataagaccc 27037539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 28886142 - 28886114
Alignment:
Q  200 atactacctccgtccctaattataagacc 228  Q
    |||||||||||||||||||||||||||||    
T  28886142 atactacctccgtccctaattataagacc 28886114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 38613773 - 38613745
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  38613773 tactacctccgtccctaattataagaccc 38613745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 41317593 - 41317621
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  41317593 tactacctccgtccctaattataagaccc 41317621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 43456658 - 43456630
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  43456658 tactacctccgtccctaattataagaccc 43456630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 5151 - 5179
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  5151 tactacctccgtccctaattataagaccc 5179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 10219 - 10191
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  10219 tactacctccgtccctaattataagaccc 10191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 18497 - 18525
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  18497 tactacctccgtccctaattataagaccc 18525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 18793 - 18765
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  18793 tactacctccgtccctaattataagaccc 18765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 3438 - 3466
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  3438 tactacctccgtccctaattataagaccc 3466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 48654 - 48682
Alignment:
Q  201 tactacctccgtccctaattataagaccc 229  Q
    |||||||||||||||||||||||||||||    
T  48654 tactacctccgtccctaattataagaccc 48682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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