View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_8 (Length: 402)
Name: NF10187_low_8
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 6913499 - 6913117
Alignment:
| Q |
1 |
tgaaaccgacccgaatcaccagctgaaagtttcatgtaggagtaagaaggtgagtcacaaaaccaagaactaatattagacctttctttgccattcttgt |
100 |
Q |
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| T |
6913499 |
tgaaaccgacctgaatcaccagctgaaagtttcatgtaggagtaagaaggtgagtcacaaaaccaagaactaatattagacctttgtttgccattcttgt |
6913400 |
T |
|
| Q |
101 |
attgtactatggctttgtacacaaatggaataagaccctccattgttaagagaaagtgaaagtgaaagannnnnnnggtttggtttgtgaattggatgga |
200 |
Q |
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| T |
6913399 |
attgtactatggctttgtacacaaatggaataagaccctccattgttaagagaaagtgaaagtgaaag-gttttttggtttggtttgtgaattggatgga |
6913301 |
T |
|
| Q |
201 |
ttgaaggtgagaggagaataaggggggtttaaatgtgagggagggtaagggtatgtgacgtggagtaatagaatgtataggagtgtaactcttcacgcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6913300 |
ttgaaggtgagaggagaataaggggggtttaaatgtgagggagggtaagggtatgtgacgtggagtaatagaatgtattggagtgtaactcttcacgcta |
6913201 |
T |
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| Q |
301 |
agcctagggaggtttcattttcaatgtaaacctacaagaagattttgaaagctatgtgcaaaccacattcattgatcacaatgc |
384 |
Q |
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| T |
6913200 |
agcctagggaggtttcattttcaatgtaaacctacaagaagattttgaaagctatgtgcaaaccacattcattgatcacaatgc |
6913117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 45073404 - 45073137
Alignment:
| Q |
1 |
tgaaaccgacccgaatcaccagctgaaagtttcatgtaggagtaagaaggtgagtca---caaaaccaagaactaatattagacctttctttgccattct |
97 |
Q |
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|||||||||||| ||||| |||| ||||||||||||| || || |||| |||| | |||||| |||||| ||||||||| ||||||||| |||||| |
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| T |
45073404 |
tgaaaccgacccaaatcatcagccaaaagtttcatgtatgaataggaagatgaggcgacgcaaaacaaagaaccaatattagaactttctttgtcattct |
45073305 |
T |
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| Q |
98 |
tgtattgtactatggctttgtacacaaatggaataagaccctccattgttaagagaaagtgaaagtgaaagannnnnnnggtttggtttgtgaattggat |
197 |
Q |
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||||||| |||| || | ||||| || ||| |||||||||||||||| ||||| |||||| ||||||||||||||| ||| |
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| T |
45073304 |
tgtattgcactacggttgtgtactcagatgcaataagaccctccatttttaag--------aaagtgtttttttttttttttttggtttgtgaattagat |
45073213 |
T |
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| Q |
198 |
ggattgaaggtgagaggagaataaggggggtttaaatgtgagggagggtaagggtatg-tgacgtggagtaataga |
272 |
Q |
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| T |
45073212 |
ggattgaagttgaaaggagaataagagggatttaaaggtgtgggaaggtaagggtatgatgacgtggagtaataga |
45073137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23157332 - 23157272
Alignment:
| Q |
1 |
tgaaaccgacccgaatcaccagctgaaagtttcatgtaggagtaagaaggtgagtcacaaa |
61 |
Q |
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||||||||||||||||||||||| | |||| ||||||| || || |||||||| ||||||| |
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| T |
23157332 |
tgaaaccgacccgaatcaccagccggaagtctcatgtatgaatatgaaggtgattcacaaa |
23157272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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