View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_81 (Length: 227)

Name: NF10187_low_81
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_81
NF10187_low_81
[»] chr4 (6 HSPs)
chr4 (1-227)||(28787015-28787241)
chr4 (4-224)||(24853356-24853573)
chr4 (4-213)||(51246632-51246839)
chr4 (4-161)||(17525423-17525579)
chr4 (4-192)||(24856247-24856432)
chr4 (4-92)||(28787970-28788058)
[»] scaffold0406 (1 HSPs)
scaffold0406 (4-198)||(6290-6481)
[»] chr1 (3 HSPs)
chr1 (4-225)||(22056417-22056628)
chr1 (3-212)||(22055350-22055554)
chr1 (10-80)||(29371919-29371990)
[»] chr7 (1 HSPs)
chr7 (7-188)||(22622282-22622460)
[»] chr3 (2 HSPs)
chr3 (3-179)||(12738200-12738381)
chr3 (3-188)||(12739351-12739544)
[»] chr5 (6 HSPs)
chr5 (4-225)||(5046458-5046686)
chr5 (4-225)||(5047229-5047457)
chr5 (4-70)||(5048000-5048066)
chr5 (13-225)||(5664690-5664895)
chr5 (76-225)||(15063186-15063335)
chr5 (113-203)||(5663643-5663733)
[»] chr8 (1 HSPs)
chr8 (4-213)||(1275079-1275289)
[»] chr2 (3 HSPs)
chr2 (4-161)||(20978767-20978930)
chr2 (7-76)||(33798860-33798929)
chr2 (27-103)||(19292331-19292408)
[»] scaffold0272 (1 HSPs)
scaffold0272 (53-97)||(3554-3598)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28787015 - 28787241
Alignment:
Q  1 tattagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgtatataatattgaaggctt 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28787015 tattagttctagaaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagccttttagatgcaatgtatataatattgaaggctt 28787114  T
Q  101 caccaccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagctcctacacta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  28787115 caccaccatatcatattatctcctcctataatgaggtaattactaatgtgtgtcctcttgttcaatgctactaaccactctaccattagctcctacacta 28787214  T
Q  201 tatttttccaacagtggtatcagagat 227  Q
    ||||||| |||||||||||||||||||    
T  28787215 tattttttcaacagtggtatcagagat 28787241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 24853356 - 24853573
Alignment:
Q  4 tagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgtatataatattgaaggcttcac 103  Q
    |||||||| |||||||||| | ||||||||||||||| ||| | | ||||||||||||||||||||| |||||||||||  ||||||||||||||||||     
T  24853356 tagttctaaaaacatcttctaacacctataaatagacttatttggatgcaattgtattcaagcctttaagatgcaatgtcaataatattgaaggcttcat 24853455  T
Q  104 caccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagctcctacactatat 203  Q
    ||   ||||||||| | |||||||| |||||| ||||||| ||  ||||||||||||| |||||||||||| ||||  ||||||||||||||||||||||    
T  24853456 ca---tatcatattctttcctcctacaatgagctaattaccaatatgtgtcctcttgtccaatgctactaaacactccaccactagctcctacactatat 24853552  T
Q  204 ttttccaacagtggtatcaga 224  Q
    ||||| |||| ||||||||||    
T  24853553 ttttctaacattggtatcaga 24853573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 51246632 - 51246839
Alignment:
Q  4 tagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgtatataatattgaaggcttcac 103  Q
    |||||||| |||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||| |||| |||||  ||||||||||||||||       
T  51246632 tagttctagaaacatctacaagcacctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtcaataatattgaaggctt--- 51246728  T
Q  104 caccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagct-cctacactata 202  Q
    ||||| |||||||| |||||||||| |||||| ||||| |||| |||||||||||||| | || ||||||| ||||  | |||||||| |||  ||||||    
T  51246729 caccaaatcatattctctcctcctacaatgagctaattcctaatgtgtgtcctcttgtcccatactactaaacactccagcactagctcccttaactata 51246828  T
Q  203 tttttccaaca 213  Q
    ||||| |||||    
T  51246829 ttttttcaaca 51246839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 17525579 - 17525423
Alignment:
Q  4 tagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgtat--ataatattgaaggcttc 101  Q
    |||||||| |||||||| ||||| | ||||||||||| |||||  ||| |||||||||||||||||||||||||||||| |  ||||||||||||||||     
T  17525579 tagttctagaaacatctacaagcgcttataaatagacttatatgtgtgaaattgtattcaagcctttgagatgcaatgtgtcaataatattgaaggctt- 17525481  T
Q  102 accaccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgt 161  Q
      |||||||||||||| |||||||||| |||||| |||||  |||| |||||||||||||    
T  17525480 --caccatatcatattctctcctcctacaatgagctaattcataacatgtgtcctcttgt 17525423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 24856247 - 24856432
Alignment:
Q  4 tagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgtatataatattgaaggcttcac 103  Q
    |||||||| |||||| ||| | ||||||||||||||| |||   | ||||||||||||| ||||||| |||||||||||  ||||||||||| | |||||    
T  24856247 tagttctagaaacattttctaacacctataaatagacttattaggatgcaattgtattccagcctttaagatgcaatgtcaataatattgaaagtttcac 24856346  T
Q  104 caccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagctc 192  Q
    |   |||||||||| |||||||||| |||||| ||||||| ||  |||||| |||||| |||||||||||| ||||  |||||||||||    
T  24856347 c---atatcatattctctcctcctacaatgagctaattaccaatatgtgtcatcttgtccaatgctactaaacactccaccactagctc 24856432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 28787970 - 28788058
Alignment:
Q  4 tagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgtatataatatt 92  Q
    |||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||  ||||||||    
T  28787970 tagttctagaaacatcttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 28788058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 6290 - 6481
Alignment:
Q  4 tagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgtatataatattgaaggcttcac 103  Q
    |||||||| ||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  6290 tagttctagaaacagcttcaagcacctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtcaataatattgaaggcttcac 6389  T
Q  104 caccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagctcctacac 198  Q
     |    |||||||||||||||||||||||||| ||||| |||| ||||||| |||||| ||||||||||||||||| ||||| || ||| |||||    
T  6390 aaa---atcatattatctcctcctataatgagctaattcctaatgtgtgtcatcttgtccaatgctactaaccactctaccattaactcttacac 6481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 22056628 - 22056417
Alignment:
Q  4 tagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgt-atataatattgaaggcttca 102  Q
    |||||||| ||| ||||||||||||||||||| |||| || |  |||||||||| ||||||||       ||||||||| | ||| ||||||||||||||    
T  22056628 tagttctagaaatatcttcaagcacctataaagagacttaaaa-ggtgcaattgcattcaagc-------atgcaatgtcagatactattgaaggcttca 22056537  T
Q  103 ccaccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagctcctacactata 202  Q
    |||   ||| ||||| ||||||| || |||||| ||||||| ||  ||||||||||||| ||||||||||||| | | ||||| | ||||||||||||||    
T  22056536 cca---tattatattctctcctcatacaatgagttaattacaaatatgtgtcctcttgtccaatgctactaacaaatctaccattggctcctacactata 22056440  T
Q  203 tttttccaacagtggtatcagag 225  Q
    ||||||||||| |||||||||||    
T  22056439 tttttccaacaatggtatcagag 22056417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 22055554 - 22055350
Alignment:
Q  3 ttagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgtatataatattgaaggcttca 102  Q
    ||||||||| || ||||||||||||| ||||||||||| |  | ||||||||||||| |||||||||| |||||||||||  |||||||||||||||||     
T  22055554 ttagttctagaatcatcttcaagcacttataaatagac-tggaatggtgcaattgtagtcaagcctttcagatgcaatgtcgataatattgaaggcttc- 22055457  T
Q  103 ccaccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagctcctacactata 202  Q
      ||||||| ||||||| ||||| || |  ||| ||||||| |  || ||| |||||| || ||   | |||||||| ||||||||||||| ||||||||    
T  22055456 --accatattatattatttcctcatacatggagctaattaccagtgtttgttctcttg-tcgataacattaaccactctaccactagctccgacactata 22055360  T
Q  203 tttttccaac 212  Q
    |||| |||||    
T  22055359 ttttaccaac 22055350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 29371919 - 29371990
Alignment:
Q  10 tataaacatcttcaagcacctataaatagacatatattggtgc-aattgtattcaagcctttgagatgcaat 80  Q
    ||||||||||||||||||| ||||||||||  ||||| ||||| ||||||||  |||||||| |||| ||||    
T  29371919 tataaacatcttcaagcacttataaatagatttatatgggtgcaaattgtatgtaagcctttaagatacaat 29371990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 22622460 - 22622282
Alignment:
Q  7 ttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgtatataatattgaaggcttcaccac 106  Q
    ||||| ||||||||||| |||| ||||||||| | ||||| |||||||||||||||||||||||||||||| ||||  ||||||||| |||   ||  ||    
T  22622460 ttctagaaacatcttcaggcacttataaataggcttatatgggtgcaattgtattcaagcctttgagatgccatgtcaataatattgtagg---cattac 22622364  T
Q  107 catatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccacta 188  Q
    ||| ||||||| | |||||||| |||||| |||||   ||  ||||||||||||| ||||||||||||| ||| ||||||||    
T  22622363 catttcatattctttcctcctagaatgagctaatttacaatatgtgtcctcttgtccaatgctactaacaactctaccacta 22622282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 12738200 - 12738381
Alignment:
Q  3 ttagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcc--------tttgagatgcaatgtatataatattga 94  Q
    ||||||||| |||||||| |||||||||||||||| || ||| | ||||||||||||||||||||        ||||||||||||| || ||||||||||    
T  12738200 ttagttctagaaacatctacaagcacctataaataaacttatttgggtgcaattgtattcaagcctttaagcttttgagatgcaatctaaataatattga 12738299  T
Q  95 aggcttcaccaccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccact 179  Q
    ||||||   ||||| |||||||| ||| |||||| |||||| | |||||| | | |||||||||||| ||||| |||||| ||||    
T  12738300 aggctt---caccaaatcatattctcttctcctacaatgagcttattactgatgcgtgtcctcttgtgcaatgttactaaacact 12738381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 12739351 - 12739544
Alignment:
Q  3 ttagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagccttt--------gagatgcaatgtatataatattga 94  Q
    ||||||||| |||||||| |||||| |||||||||||  ||| | | |||||||||||||||||||||        ||||||||||||  ||||||||||    
T  12739351 ttagttctagaaacatctacaagcatctataaatagaattatttggatgcaattgtattcaagcctttaagcctttgagatgcaatgttaataatattga 12739450  T
Q  95 aggcttcaccaccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccacta 188  Q
    |||||||||||    ||  | || ||| |||||| |||||| | |||| ||| |||||||||||||| ||||| |||||| ||||  |||||||    
T  12739451 aggcttcaccaaatcatattcttctcttctcctacaatgagcttattattaatgtgtgtcctcttgtgcaatgttactaaacactccaccacta 12739544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 5046458 - 5046686
Alignment:
Q  4 tagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcct--------ttgagatgcaatgtatataatattgaa 95  Q
    ||||| || |||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||        ||||||||||||||  ||||||||  |    
T  5046458 tagttttagaaacatctacaagcacctataaatagacttatatgagtgcaattgtattcaagcctttaagccattgagatgcaatgtcaataatattaga 5046557  T
Q  96 ggcttcaccaccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagctccta 195  Q
    |||||   |||||||||||||| |||||||||| |||||| || |||| || | ||||||| |||| ||||  |||||| ||||  | |||||||||       
T  5046558 ggctt---caccatatcatattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaatattactaaacactccagcactagctctct 5046654  T
Q  196 cac--tatatttttccaacagtggtatcagag 225  Q
    | |  ||||||||||||| |||||||||||||    
T  5046655 cgctatatatttttccaatagtggtatcagag 5046686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 5047229 - 5047457
Alignment:
Q  4 tagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcct--------ttgagatgcaatgtatataatattgaa 95  Q
    ||||| || |||||||| |||||||||||||||| || |||||  ||||||||||||||||||||        |||| |||||||||  ||||||||  |    
T  5047229 tagttttagaaacatctacaagcacctataaatatacttatatgagtgcaattgtattcaagcctttaagccattgaaatgcaatgtcaataatattaga 5047328  T
Q  96 ggcttcaccaccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagctccta 195  Q
    |||||   |||||||||||||| |||||||||| |||||| || |||| || | ||||||| |||| ||||  |||||| ||||  | |||||||||       
T  5047329 ggctt---caccatatcatattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaatattactaaacactccagcactagctctct 5047425  T
Q  196 cac--tatatttttccaacagtggtatcagag 225  Q
    | |  ||||||||||||| |||||||||||||    
T  5047426 cgctatatatttttccaatagtggtatcagag 5047457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 5048000 - 5048066
Alignment:
Q  4 tagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagccttt 70  Q
    ||||| || |||||||| |||||||||||||||| || |||||  ||||||||||||||||||||||    
T  5048000 tagttttaaaaacatctacaagcacctataaatatacttatatgagtgcaattgtattcaagccttt 5048066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 5664895 - 5664690
Alignment:
Q  13 aaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgtatataatattgaaggcttcaccaccatatc 112  Q
    |||||||||||||||||||||    ||| ||||| |||||||||||||||||| |||| | || |||||   |||||||||| |||||   | |  ||||    
T  5664895 aaacatcttcaagcacctata----gacttatatgggtgcaattgtattcaag-cttttaaatacaatgacaataatattgagggctt---ccctgtatc 5664804  T
Q  113 atattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagctcctacactatat-ttttccaa 211  Q
    ||||| |||||||||| ||| |  ||||||| || ||||| | |||||| |||||| ||  |||||| ||| ||| ||| | ||||||||| ||||| ||    
T  5664803 atattctctcctcctacaataaattaattaccaatgtgtgccttcttgtccaatgccacataccactctacaacttgcttccacactatatattttctaa 5664704  T
Q  212 cagtggtatcagag 225  Q
    ||||  ||||||||    
T  5664703 cagttctatcagag 5664690  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 15063186 - 15063335
Alignment:
Q  76 gcaatgtatataatattgaaggcttcaccaccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaac 175  Q
    |||||||  ||||||||||||||||||||   |||||||||| || ||||||| |||  | | || ||||| ||| ||||||| || | || ||||||||    
T  15063186 gcaatgtcaataatattgaaggcttcacc---atatcatattctcacctcctacaatatgctcatcactaatgtgcgtcctctagtccgatactactaac 15063282  T
Q  176 cactttaccactagctc---ctacactatatttttccaacagtggtatcagag 225  Q
    |||| |||||| |||||   |||||||||| |||| | ||| | |||||||||    
T  15063283 cactctaccaccagctccaactacactataattttactacaatagtatcagag 15063335  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 5663733 - 5663643
Alignment:
Q  113 atattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagctcctacactatat 203  Q
    ||||| |||||| ||| |||||| || |||  || ||||||| |||||| ||||||||||||||| | |||||||||| || ||| |||||    
T  5663733 atattctctccttctacaatgagctatttatcaatgtgtgtcttcttgtccaatgctactaaccattgtaccactagcacccacaatatat 5663643  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 1275289 - 1275079
Alignment:
Q  4 tagttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatgtatataatatt--gaaggcttc 101  Q
    |||||||| ||||| |||||||||||||||| || |  ||||| ||||||||||||||||| | ||| |||||||||||  ||||||||   |||||||     
T  1275289 tagttctagaaacaccttcaagcacctataagtataggtatatgggtgcaattgtattcaaacgtttaagatgcaatgtcaataatattaaaaaggctt- 1275191  T
Q  102 accaccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgttcaatgctactaaccactttaccactagctcctacac--t 199  Q
      ||||| ||||| || ||| ||| || ||||  |||| |||||| |||||||||||||| |||||   ||||| ||| ||||| ||||||  ||||  |    
T  1275190 --caccaaatcatgttctcttctcatacaatgtagtaactactaatgtgtgtcctcttgtccaatgtctctaactactctaccattagctcacacactat 1275093  T
Q  200 atatttttccaaca 213  Q
    ||||||||||||||    
T  1275092 atatttttccaaca 1275079  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 20978930 - 20978767
Alignment:
Q  4 tagttctataaacatcttcaa-gcacctataaatagacatatattggtgcaattgtattcaagccttt--------gagatgcaatgtatataatattga 94  Q
    |||||||| |||||||| ||| | ||||||||||| || ||||| ||||| ||| |||||||||||||        ||||||||||||  ||||||||||    
T  20978930 tagttctagaaacatctacaaagtacctataaataaacttatatgggtgccattatattcaagcctttaaacctttgagatgcaatgtcaataatattga 20978831  T
Q  95 aggcttcaccaccatatcatattatctcctcctataatgaggtaattactaacgtgtgtcctcttgt 161  Q
    |||||||   ||||||||||||| |||||||||| |||  | | || ||||| ||||||||||||||    
T  20978830 aggcttc---accatatcatattctctcctcctacaatatgcttatcactaatgtgtgtcctcttgt 20978767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 33798929 - 33798860
Alignment:
Q  7 ttctataaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagcctttgagatg 76  Q
    ||||| ||||||||||||| | ||||||||||| |   ||  ||||||||||||||||||||||||||||    
T  33798929 ttctagaaacatcttcaaggatctataaatagataagcatatgtgcaattgtattcaagcctttgagatg 33798860  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 19292408 - 19292331
Alignment:
Q  27 acctataaatagacatatattggtgcaattgtattcaagcctttgagatgcaatg-tatataatattgaaggcttcac 103  Q
    ||||||||||||||| | ||  |||||||||||||||| ||||||| ||| ||||  | ||||||||||| |||||||    
T  19292408 acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac 19292331  T

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Target: scaffold0272 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 3598 - 3554
Alignment:
Q  53 aattgtattcaagcctttgagatgcaatgtatataatattgaagg 97  Q
    |||||||||||| |||||||||||||||||  |||||||| ||||    
T  3598 aattgtattcaaacctttgagatgcaatgtcaataatattaaagg 3554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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