View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_86 (Length: 220)
Name: NF10187_low_86
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 49289829 - 49289633
Alignment:
| Q |
1 |
cactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
100 |
Q |
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| T |
49289829 |
cactggcctttctgaaaccatctttgttactctctccattatatata----atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
49289734 |
T |
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| Q |
101 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttgttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49289733 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgttgttg |
49289634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 49296780 - 49296584
Alignment:
| Q |
1 |
cactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296780 |
cactggcctttctgaaaccatctttgttactctctccattatatata----atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
49296685 |
T |
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| Q |
101 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttgttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49296684 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgttgttg |
49296585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 49303510 - 49303318
Alignment:
| Q |
1 |
cactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303510 |
cactggcctttctgaaaccatctttgttactctctccattatatata----atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
49303415 |
T |
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| Q |
101 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttg |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49303414 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgttg |
49303318 |
T |
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