View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_87 (Length: 220)

Name: NF10187_low_87
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_87
NF10187_low_87
[»] chr4 (10 HSPs)
chr4 (18-208)||(30264258-30264448)
chr4 (18-208)||(30287740-30287930)
chr4 (18-200)||(30271160-30271342)
chr4 (18-200)||(30280847-30281029)
chr4 (18-200)||(30304227-30304409)
chr4 (18-117)||(30032301-30032400)
chr4 (18-117)||(30048547-30048646)
chr4 (18-117)||(30062888-30062987)
chr4 (18-117)||(30220279-30220378)
chr4 (18-117)||(30228686-30228785)
[»] chr7 (2 HSPs)
chr7 (18-117)||(2311389-2311488)
chr7 (18-116)||(29483193-29483291)
[»] scaffold0024 (2 HSPs)
scaffold0024 (18-104)||(79534-79620)
scaffold0024 (18-68)||(72506-72556)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 30264448 - 30264258
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30264448 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 30264349  T
Q  118 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattcaatctctg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30264348 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattcaatctctg 30264258  T

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Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 30287740 - 30287930
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287740 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 30287839  T
Q  118 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattcaatctctg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287840 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattcaatctctg 30287930  T

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Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 30271342 - 30271160
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  30271342 caaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtcttttcct 30271243  T
Q  118 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattc 200  Q
       |||||  |||||||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  30271242 tcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccatattctcctttttcaattc 30271160  T

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Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 30280847 - 30281029
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  30280847 caaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtcttttcct 30280946  T
Q  118 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattc 200  Q
       |||||  |||||||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  30280947 tcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccatattctcctttttcaattc 30281029  T

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Target: chr4; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 30304409 - 30304227
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||    
T  30304409 caaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagttgatgacccttctcttcctttgtcttttcct 30304310  T
Q  118 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattc 200  Q
       |||||  |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||    
T  30304309 tcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggttcccttcaaccatattcccctttttcaattc 30304227  T

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Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 30032400 - 30032301
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  30032400 caaacttcatcatgcacttggtgacggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctttatcttttcct 30032301  T

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Target: chr4; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 30048646 - 30048547
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  30048646 caaacttcatcatggacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct 30048547  T

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Target: chr4; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 30062987 - 30062888
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  30062987 caaacttcatcatggacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct 30062888  T

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Target: chr4; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 30220279 - 30220378
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  30220279 caaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct 30220378  T

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Target: chr4; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 30228785 - 30228686
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 117  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  30228785 caaacttaatcatgcacttggtgatggttactctctcatgagtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct 30228686  T

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Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 2311389 - 2311488
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 117  Q
    ||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||  | ||||||||||| |||||||||||||||||||||    
T  2311389 caaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtcttttcct 2311488  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 29483291 - 29483193
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcc 116  Q
    |||| |||| |||||| |||| ||||| |||  |||||||||||   |||||||  | ||||| |||||||||||||||||||| | |||||| |||||    
T  29483291 caaatttcaccatgcaattggagatggctacaatctcatgggtgtcattctttcgagccttcaaagagctgatgatccttctctccgtttgtcctttcc 29483193  T

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Target: scaffold0024 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 79620 - 79534
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcc 104  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||| |  | ||||||||| | |||||||||||    
T  79620 caaacttcatcatgcacttggagatggttactctctaatgggtgcacttctttcatgtttagaaagagctgataacccttctcttcc 79534  T

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Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 72556 - 72506
Alignment:
Q  18 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttct 68  Q
    ||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  72556 caaacttcatcatgcacttggagatggttactctctaatgggagctcttct 72506  T

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