View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_9 (Length: 402)
Name: NF10187_low_9
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 137 - 385
Target Start/End: Original strand, 9072698 - 9072942
Alignment:
| Q |
137 |
cgctgagacacattgaacttgaattagaaaaataatatgtagatgattacatgaatgaaaaactcacataaaagagacattgaataaagtgaatgaaagc |
236 |
Q |
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| T |
9072698 |
cgctgagacactttgaacttgaattggaaaaataatatgtagatgattacatgaatgaaaaactcacataaaagaggcattgaataaagtgaatgaaagc |
9072797 |
T |
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| Q |
237 |
aaaacaaaaaccatgcattgcannnnnnnnnnattcatcaatacttctacaaaaagaagaagaatagtcacaatgagaaatattcagaaataatgaggat |
336 |
Q |
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| T |
9072798 |
aaaacaaaaaccatgcattgca----ttttttattgatcaatacttctacaaaaagaagaagaatagtcacaatgagaaatattcagaaataatgaggat |
9072893 |
T |
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| Q |
337 |
ggagtttggggaattgtgtaatggaaacaatgacaattagtgataatta |
385 |
Q |
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| T |
9072894 |
ggagtttggggaattgagtaatggaaacaatgacaattagtgataatta |
9072942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 9072573 - 9072612
Alignment:
| Q |
12 |
atgaacatgattgacgactacaactacaattgcacacctc |
51 |
Q |
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| T |
9072573 |
atgaacatgattgacgactacaactacaattgcacacctc |
9072612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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