View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_91 (Length: 210)

Name: NF10187_low_91
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_91
NF10187_low_91
[»] chr3 (4 HSPs)
chr3 (40-194)||(30441645-30441801)
chr3 (1-49)||(33933388-33933436)
chr3 (1-41)||(27857166-27857206)
chr3 (1-40)||(17916111-17916150)
[»] chr1 (4 HSPs)
chr1 (1-49)||(3264245-3264293)
chr1 (1-36)||(52363212-52363247)
chr1 (1-41)||(21931786-21931826)
chr1 (1-41)||(34867511-34867551)
[»] chr4 (5 HSPs)
chr4 (1-40)||(17221332-17221371)
chr4 (1-47)||(232717-232763)
chr4 (1-39)||(11159443-11159481)
chr4 (14-50)||(20472834-20472870)
chr4 (1-41)||(41707960-41708000)
[»] chr7 (2 HSPs)
chr7 (1-41)||(18938968-18939008)
chr7 (4-40)||(32555334-32555370)
[»] scaffold0067 (1 HSPs)
scaffold0067 (1-40)||(26192-26231)
[»] chr8 (2 HSPs)
chr8 (1-40)||(18553001-18553040)
chr8 (1-38)||(35735746-35735783)
[»] chr5 (3 HSPs)
chr5 (1-40)||(41880072-41880111)
chr5 (1-39)||(932092-932130)
chr5 (1-39)||(25566645-25566683)
[»] chr2 (2 HSPs)
chr2 (1-40)||(7538513-7538552)
chr2 (1-40)||(20494580-20494619)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 30441645 - 30441801
Alignment:
Q  40 ttaatttttccaatagatat--actcgacaaaatttatcttaaatcttctattacttgatattccacaaattttgtatataggacgatgcatcactttgc 137  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  30441645 ttaatttttccaatagatatatactcgacaaaatttatcttaaatcttctatttcttgatattccacaaattttgtatataggacgatgcatcgctttgc 30441744  T
Q  138 atttatcgatattatggagagatctagatgaattgtcccaatttgtatacataatag 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30441745 atttatcgatattatggagagatctagatgaattgtcccaatttgcatacataatag 30441801  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33933436 - 33933388
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagccttaatttttc 49  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  33933436 tatttaaattagttaggggtccaaaagtgcaattaagccttattttttc 33933388  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27857206 - 27857166
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcctt 41  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  27857206 tatttaaattagttagggctccaaaagtacaattaagcctt 27857166  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 17916150 - 17916111
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcct 40  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  17916150 tatttaaattagttaggggtccaaaagtgcaattaagcct 17916111  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3264245 - 3264293
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagccttaatttttc 49  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  3264245 tatttaaattagttaggggtccaaaagtgcaattaagccttattttttc 3264293  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 52363247 - 52363212
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaa 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  52363247 tatttaaattagttaggggttcaaaagtgcaattaa 52363212  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21931826 - 21931786
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcctt 41  Q
    ||||| ||||||||||||| |||||||| ||||||||||||    
T  21931826 tattttaattagttagggggtcaaaagtgcaattaagcctt 21931786  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34867551 - 34867511
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcctt 41  Q
    ||||||||||| |||||||| ||||||| ||||||||||||    
T  34867551 tatttaaattaattaggggtccaaaagtgcaattaagcctt 34867511  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 17221371 - 17221332
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcct 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  17221371 tatttaaattagttaggggttcaaaagtgcaattaagcct 17221332  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 232763 - 232717
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagccttaatttt 47  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  232763 tatttaaattagttaggggtccaaaagtgcaattaagccttactttt 232717  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11159481 - 11159443
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcc 39  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  11159481 tatttaaattagttaggggtccaaaagtacaattaagcc 11159443  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 20472834 - 20472870
Alignment:
Q  14 taggggttcaaaagtacaattaagccttaatttttcc 50  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  20472834 taggggtccaaaagtacaattaagcctaaatttttcc 20472870  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41707960 - 41708000
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcctt 41  Q
    |||||||||||||||||| | ||||||| ||||||||||||    
T  41707960 tatttaaattagttagggatccaaaagtgcaattaagcctt 41708000  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18939008 - 18938968
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcctt 41  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  18939008 tatttaaattagttaggggtccaaaagtgcaattaagcctt 18938968  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 32555370 - 32555334
Alignment:
Q  4 ttaaattagttaggggttcaaaagtacaattaagcct 40  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  32555370 ttaaattagttaggggtccaaaagtgcaattaagcct 32555334  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26231 - 26192
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcct 40  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  26231 tatttaaattagttaggggtccaaaagtgcaattaagcct 26192  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18553040 - 18553001
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcct 40  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  18553040 tatttaaattagttaggggtccaaaagtgcaattaagcct 18553001  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35735746 - 35735783
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagc 38  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  35735746 tatttaaattagttaggggtccaaaagtgcaattaagc 35735783  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41880111 - 41880072
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcct 40  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  41880111 tatttaaattagttaggggtccaaaagtgcaattaagcct 41880072  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 932092 - 932130
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcc 39  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  932092 tatttaaattagttaggggtccaaaagtgcaattaagcc 932130  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25566683 - 25566645
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcc 39  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  25566683 tatttaaattagttaggggtccaaaagtgcaattaagcc 25566645  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7538513 - 7538552
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcct 40  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  7538513 tatttaaattagttaggggtccaaaagtgcaattaagcct 7538552  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20494580 - 20494619
Alignment:
Q  1 tatttaaattagttaggggttcaaaagtacaattaagcct 40  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  20494580 tatttaaattagttaggggtccaaaagtgcaattaagcct 20494619  T

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