View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10188_high_11 (Length: 237)

Name: NF10188_high_11
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10188_high_11
NF10188_high_11
[»] chr4 (1 HSPs)
chr4 (10-199)||(52725193-52725381)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 52725381 - 52725193
Alignment:
Q  10 gagaagaattaagaagaattatctaacaagaacgctaaacaaaaaatttaggtgcaagagggattaaaatacaagtaaagattacgtatagaaagttttg 109  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52725381 gagaagaattaagaagaattatctaacaagaatgctaaacaaaagatttaggtgcaagagggattaaaatacaaataaagattacgtatagaaagttttg 52725282  T
Q  110 ctaaatacatcgaatgaatcatcccgaaatcatcacggatataaaactaattgatnnnnnnnttgcacatggacggaatacatgagaagt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||| ||||||||||||||||    
T  52725281 ctaaatacatcgaatgaatcatcccgaaatcatcacggatataaaactaattgat-aaaaaattgcacatggatggaatacatgagaagt 52725193  T

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