View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_high_12 (Length: 229)
Name: NF10188_high_12
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_high_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 1355909 - 1355686
Alignment:
| Q |
6 |
aaaactttcataccacataattgaattctagtctacttctgctgccaagattgtgacatgcaaatgcagaagttgatacttgataatcaactacagtcct |
105 |
Q |
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| T |
1355909 |
aaaactttcataccacataattgaattctagtctacttctgctgccaagtttgtgatatgcaaatgcagaagttgatacttgataatcaactacagtcct |
1355810 |
T |
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| Q |
106 |
ttgaagcaattttcaccaatatgaaattaagagaatgattagtctagagatacaattttttgtnnnnnnnngagccatatcacaaatcagatatagaagg |
205 |
Q |
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| T |
1355809 |
ttgaagcaattttcaccaatatgaaattaagagaatgattagtctagagatacaattttttgtaaaaaaaagtgccatatcacaaatcagatatagaagg |
1355710 |
T |
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| Q |
206 |
atggccaattaacatttttgttac |
229 |
Q |
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| T |
1355709 |
atggccaattaacatttttgttac |
1355686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 1362752 - 1362656
Alignment:
| Q |
6 |
aaaactttcataccacataattgaattctagtctacttctgctgccaagattgtgacatgcaaatgcagaagttgatacttgataatcaactacagtcct |
105 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||| | | ||| || |||||| |||| ||||| ||||||||| ||||| |||| |||| |
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| T |
1362752 |
aaaactttcatgccacatatttgaattctagtctacttctgct---atgtttgagatatgcaattgcaaaagtttatacttgatcatcaaatacaatcct |
1362656 |
T |
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