View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_high_6 (Length: 306)
Name: NF10188_high_6
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 14901563 - 14901829
Alignment:
| Q |
17 |
agcacagattgctaggaagttgagaataaagattaagaacccttgatactttgttcaaatgatgaactctttttaagttgagtgtgtattgtgtttggaa |
116 |
Q |
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| T |
14901563 |
agcacagattgctcggaagttgagaataaagattaagaacccttgatacgttgttcaaatgat-------ttttaagttgagtgtgtattgtgtttggaa |
14901655 |
T |
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| Q |
117 |
taacagttgtgagaaatcaatcatagtaaatgtcattagcttaaatgtcacgagccactttgagttttttatagttgattttatttgtattattcaactc |
216 |
Q |
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| T |
14901656 |
taacagttgtgagaaatcaatcatagtaaatgtcattagcttaaatgtcacgagccactttgagtttttcatagttgattttatttgtattattcaactc |
14901755 |
T |
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| Q |
217 |
--atgtattatttggttagaattgaactaatatcagtcatattcatattcattgtt--tctacaatgagcatct |
286 |
Q |
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| T |
14901756 |
aaatgtattatttggttaggattgaactaatatcagtgatattcatattcattgtttatctacaatgagcatct |
14901829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 14908326 - 14908442
Alignment:
| Q |
17 |
agcacagattgctaggaagttgagaataaagattaagaacccttgatactttgttcaa---atgatgaactctttttaagttgagtgtgtattgtgtttg |
113 |
Q |
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| T |
14908326 |
agcacagattgctcggaagttaagaataaaggttaagaacccttgatactttgttcaaacgatgatgaactattttcaacttgagtgtgtattgtgtttg |
14908425 |
T |
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| Q |
114 |
gaataacagttgtgaga |
130 |
Q |
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| T |
14908426 |
gaataatagttgtgaga |
14908442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 14912933 - 14913014
Alignment:
| Q |
137 |
tcatagtaaatgtcattagcttaaatgtcacgagccactttgagttttttatagttgattttatttgtattattcaactcat |
218 |
Q |
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| T |
14912933 |
tcatagtaaatgtcagtagcttgaatgtcacgagccactttgagttttttatagttgatttcatttgaattattcaattcat |
14913014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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