View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10188_low_10 (Length: 408)
Name: NF10188_low_10
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 36644847 - 36644466
Alignment:
| Q |
16 |
tctttcacttcttttttccttaggtagttttgcatctgaaatttttacaagtttgaggaatgaaaatggttgtaaccccacatgggagaaaaaatctctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36644847 |
tctttcacttcttttttccttaggtagttttgcatctgaaatttttacaagtttgaggaatgaaaatggttgtaacaccacatgggagaaaaaatctctt |
36644748 |
T |
|
| Q |
116 |
ataaaaaagggtttgaaaatttaagaattacaatttagcagttttaacatggcaaaacttacttgaatttccctcaatttgttactgactacaccagagt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36644747 |
ataaaaaagggtttgaaaatttaagaattacaatttagcagttttaacatggcaaaacttacttgaatttccctcaatttgttactgactacaccagagt |
36644648 |
T |
|
| Q |
216 |
tcctctcagctctaatgatctccttttcagttaagtcaccaccagtttctatctttcctgaattgataaccatggttcatggatccgtgagctaagttca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36644647 |
tcctctcagctctaatgatctccttttcagttaagtcaccaccagtttctatctttcctgaattgataaccatggttcatggatccgggagctaagttca |
36644548 |
T |
|
| Q |
316 |
caaacaagcaactagactagcacttgagggaaacattgcgaaaataaaatgcatacacattgaataaactaaccatatctct |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36644547 |
caaacaagcaactagactagcacttgagggaaacattgcgaaaataaaatgcatacacattgaataaactaaccatatctct |
36644466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University