View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_11 (Length: 407)
Name: NF10188_low_11
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 34228998 - 34228610
Alignment:
| Q |
11 |
catcaacaaccatgtaaaatcacatatctagtattccaaatactactctaggcataactagggctgtgactaatgtcagcttcaagaaaaaatatgtgtg |
110 |
Q |
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| T |
34228998 |
catctacaaccatgtaaaatcacatatctagtattccaaatactacgctaggcataactagggctgtgactaatgtcagcttcaagaaaaaatatgtgtg |
34228899 |
T |
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| Q |
111 |
aagaaagtatcttgctttgagaattattgccaccaaagagtccagtttctgcaagatacgccactccacccttgcatcgccactccacccttttcgaggc |
210 |
Q |
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| T |
34228898 |
aagaaagtatcttgctttgagaattattgccaccaaagtgtccagtttctgcaagatacgccactccacccttgcatcgccactccacccttttcgaggc |
34228799 |
T |
|
| Q |
211 |
atgaattacttcaatagcctccacgaaagcatattcttcatgagaaatacacttgtcaaggcagcatttcaatttgttagcaagaagtttggaaatcatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34228798 |
atgaattacttcaatagcctccacgaaagcatattcttcatgagaaatacacttgtcaaggcagcatttcaatctgttagcaagaagtttggaaatcatt |
34228699 |
T |
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| Q |
311 |
ttatacaatacgttacacaactagataggacacaaacccctcatggaaataggattttcacacttcggaataagccagatattcatctc |
399 |
Q |
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| T |
34228698 |
ttatacaagacgttacacaactagataggacacaaatccctcatggaaataggattttcacacttcggaataagccagatattcatctc |
34228610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 34237548 - 34237455
Alignment:
| Q |
79 |
actaatgtcagcttcaagaaaaaatatgtgtgaagaaagtatcttgctttgagaattattgccaccaaagagtccagtttctgcaagatacgccac |
174 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34237548 |
actaatgtcagcttcaagaaaa--tatgtgtggagaaagtatattgatttgagaatttttgccaccaaagagtccagtttctgcaagatacgccac |
34237455 |
T |
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