View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_12 (Length: 370)
Name: NF10188_low_12
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 21243172 - 21242822
Alignment:
| Q |
1 |
aatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttatac |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243172 |
aatactcttcaaagaagaaacatcatatttcccaaccacactctgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttatac |
21243073 |
T |
|
| Q |
101 |
ttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243072 |
ttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatccaa |
21242973 |
T |
|
| Q |
201 |
acacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgcgatgaagttctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21242972 |
acacatgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatcatccatgtttatcatcaacgacgctgcgatgaagttctt |
21242873 |
T |
|
| Q |
301 |
gtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaa |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242872 |
gtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaa |
21242822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 21258937 - 21258592
Alignment:
| Q |
1 |
aatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttatac |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||||||||||||| | |||||| ||||| |
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| T |
21258937 |
aatactcttcaacgaagaaacatcatatttcccaaccacactctgtttcgccaaagcaagattcatcgatggcacaacccacaaagttgtcactctatac |
21258838 |
T |
|
| Q |
101 |
ttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatccaa |
200 |
Q |
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|| ||||||||||||||||| |||||||||||||| |||||| | |||||||| | |||||||||||||||||| |||||||||||||||||||||| || |
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| T |
21258837 |
ttttcaatcaccttcaaaaa-ccctctaactcaaatctccccgttgaaaccaccgcacttcctctccttagctgcgcgtatgttataaccgccaatctaa |
21258739 |
T |
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| Q |
201 |
acacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgcgatgaagttctt |
300 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||| |
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| T |
21258738 |
acacatgaaacatcggtaaaacgcagaggaacac---atttaattcccctgctaaatcatcatccatgtttatcatcaatgaagtcgcgatgaagttctt |
21258642 |
T |
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| Q |
301 |
gtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtaca |
350 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21258641 |
gtgggtgagtatcacacctttgctcactcctgtagttcctgatgagtaca |
21258592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 78 - 351
Target Start/End: Complemental strand, 21254357 - 21254082
Alignment:
| Q |
78 |
cccacaagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgc |
177 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| || |
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| T |
21254357 |
cccacaaattcgtcactctatgcttctcaatcaccttcaaaaa-ccctctaactcaaacctccccgttgaaaccaccgtacttcctctccttagctgcgc |
21254259 |
T |
|
| Q |
178 |
gtatgttataaccgccaatccaaacacatg---aaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatc |
274 |
Q |
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||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||| |
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| T |
21254258 |
gtatgttataaccaccaatctaaacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatcgtccatgttaatc |
21254159 |
T |
|
| Q |
275 |
atcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaa |
351 |
Q |
| |
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|| |||| | || |||| ||||||||| || || ||||| || |||||||||||||| ||||||||||||||||| |
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| T |
21254158 |
attaacgccaccgcaatgacgttcttgtgggtaagtatcacgcccttgctcactcctgttgttcctgatgagtacaa |
21254082 |
T |
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