View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10188_low_13 (Length: 370)

Name: NF10188_low_13
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10188_low_13
NF10188_low_13
[»] chr7 (19 HSPs)
chr7 (235-370)||(33440761-33440896)
chr7 (210-268)||(42509040-42509098)
chr7 (210-270)||(9553395-9553455)
chr7 (211-273)||(1594127-1594189)
chr7 (234-275)||(20164449-20164490)
chr7 (210-252)||(8174897-8174939)
chr7 (235-265)||(10068099-10068129)
chr7 (210-248)||(11058172-11058210)
chr7 (210-252)||(48168863-48168905)
chr7 (219-272)||(1831990-1832043)
chr7 (234-267)||(12005262-12005295)
chr7 (210-267)||(19336041-19336098)
chr7 (234-267)||(21444209-21444242)
chr7 (234-271)||(24233636-24233673)
chr7 (211-248)||(34158076-34158113)
chr7 (234-262)||(442878-442906)
chr7 (234-262)||(10975868-10975896)
chr7 (234-262)||(24478027-24478055)
chr7 (234-262)||(41380730-41380758)
[»] chr2 (29 HSPs)
chr2 (119-267)||(45161290-45161439)
chr2 (210-267)||(8237987-8238044)
chr2 (216-269)||(19686187-19686240)
chr2 (210-252)||(16670512-16670554)
chr2 (210-262)||(5969728-5969780)
chr2 (219-262)||(19299771-19299815)
chr2 (216-252)||(38937516-38937552)
chr2 (177-248)||(23834599-23834670)
chr2 (234-269)||(26498854-26498889)
chr2 (219-273)||(31551901-31551956)
chr2 (210-248)||(1902948-1902986)
chr2 (210-248)||(1904410-1904448)
chr2 (210-248)||(7576343-7576381)
chr2 (219-269)||(11102176-11102225)
chr2 (210-248)||(18250891-18250929)
chr2 (210-252)||(23835774-23835816)
chr2 (210-252)||(44242357-44242399)
chr2 (239-272)||(1938268-1938301)
chr2 (218-271)||(15747745-15747798)
chr2 (233-270)||(28781964-28782001)
chr2 (234-267)||(36525618-36525651)
chr2 (234-267)||(38127761-38127794)
chr2 (82-118)||(10733920-10733956)
chr2 (219-267)||(28141686-28141734)
chr2 (234-262)||(31989353-31989381)
chr2 (234-266)||(36944003-36944035)
chr2 (210-269)||(38875984-38876044)
chr2 (210-262)||(38877023-38877075)
chr2 (210-246)||(44366887-44366923)
[»] chr4 (35 HSPs)
chr4 (217-267)||(14183609-14183659)
chr4 (217-252)||(11861916-11861951)
chr4 (210-252)||(54554396-54554438)
chr4 (218-262)||(9410292-9410337)
chr4 (210-275)||(20986045-20986110)
chr4 (210-270)||(7086068-7086128)
chr4 (217-252)||(44198611-44198646)
chr4 (80-118)||(7985562-7985600)
chr4 (210-252)||(9136406-9136448)
chr4 (210-252)||(20962207-20962249)
chr4 (210-252)||(34027196-34027238)
chr4 (210-248)||(34741395-34741433)
chr4 (210-267)||(41325533-41325591)
chr4 (210-252)||(43860915-43860957)
chr4 (210-252)||(50881424-50881466)
chr4 (216-266)||(52264444-52264494)
chr4 (210-252)||(54555353-54555395)
chr4 (214-271)||(24560717-24560774)
chr4 (218-267)||(51754210-51754259)
chr4 (235-271)||(7913457-7913493)
chr4 (219-262)||(10718155-10718199)
chr4 (219-262)||(10931924-10931968)
chr4 (212-252)||(12352463-12352503)
chr4 (234-262)||(14121587-14121615)
chr4 (216-252)||(15694472-15694508)
chr4 (218-262)||(16291416-16291460)
chr4 (234-262)||(19909351-19909379)
chr4 (216-268)||(23657001-23657052)
chr4 (210-270)||(26144153-26144213)
chr4 (234-262)||(27627008-27627036)
chr4 (234-262)||(29104162-29104190)
chr4 (234-262)||(31226525-31226553)
chr4 (234-266)||(31856892-31856924)
chr4 (234-262)||(49300740-49300768)
chr4 (210-262)||(51902049-51902101)
[»] chr3 (30 HSPs)
chr3 (210-252)||(46597510-46597552)
chr3 (218-267)||(3190636-3190685)
chr3 (210-273)||(18142199-18142262)
chr3 (210-252)||(10615288-10615330)
chr3 (210-252)||(46610022-46610064)
chr3 (218-258)||(3207561-3207601)
chr3 (210-262)||(14826077-14826129)
chr3 (216-252)||(24910939-24910975)
chr3 (210-269)||(7248861-7248920)
chr3 (216-271)||(12066223-12066278)
chr3 (216-267)||(12072872-12072923)
chr3 (210-269)||(35434074-35434133)
chr3 (166-268)||(37975966-37976069)
chr3 (219-262)||(52396454-52396497)
chr3 (210-248)||(10616775-10616813)
chr3 (216-262)||(12210031-12210077)
chr3 (210-248)||(15086240-15086278)
chr3 (210-252)||(29184983-29185025)
chr3 (210-252)||(37977508-37977550)
chr3 (82-120)||(39708624-39708662)
chr3 (210-252)||(48044287-48044329)
chr3 (210-267)||(17261023-17261080)
chr3 (234-266)||(2985838-2985870)
chr3 (234-262)||(14004608-14004636)
chr3 (217-269)||(18140936-18140988)
chr3 (219-262)||(19111268-19111312)
chr3 (234-262)||(23626263-23626291)
chr3 (234-262)||(26769924-26769952)
chr3 (218-262)||(46596098-46596142)
chr3 (216-252)||(54567751-54567787)
[»] chr6 (14 HSPs)
chr6 (210-267)||(11425770-11425827)
chr6 (219-262)||(6000682-6000725)
chr6 (219-262)||(28583550-28583593)
chr6 (210-267)||(26475761-26475818)
chr6 (210-267)||(34022804-34022861)
chr6 (216-270)||(3063491-3063545)
chr6 (210-248)||(12321580-12321618)
chr6 (210-252)||(14328648-14328690)
chr6 (210-252)||(14421658-14421700)
chr6 (210-248)||(22058280-22058318)
chr6 (234-267)||(10545829-10545862)
chr6 (234-267)||(20504130-20504163)
chr6 (234-262)||(8238002-8238030)
chr6 (210-246)||(22056502-22056538)
[»] chr1 (28 HSPs)
chr1 (210-271)||(26097029-26097090)
chr1 (210-272)||(4487531-4487594)
chr1 (211-270)||(24545452-24545511)
chr1 (177-267)||(33934635-33934726)
chr1 (216-262)||(4488719-4488765)
chr1 (218-264)||(8985817-8985863)
chr1 (65-118)||(10338675-10338729)
chr1 (210-248)||(23322611-23322649)
chr1 (210-247)||(14626780-14626817)
chr1 (216-248)||(9442997-9443029)
chr1 (212-252)||(13903375-13903415)
chr1 (216-252)||(43635848-43635884)
chr1 (234-266)||(47839987-47840019)
chr1 (210-252)||(1825307-1825349)
chr1 (210-252)||(14625383-14625425)
chr1 (234-268)||(26399200-26399234)
chr1 (235-273)||(31883445-31883483)
chr1 (218-248)||(52084835-52084865)
chr1 (219-276)||(972830-972887)
chr1 (219-248)||(5560891-5560920)
chr1 (210-247)||(7780223-7780260)
chr1 (218-267)||(8930356-8930405)
chr1 (236-269)||(10611789-10611822)
chr1 (225-262)||(30537529-30537566)
chr1 (210-247)||(40372793-40372830)
chr1 (1-29)||(1047986-1048014)
chr1 (234-262)||(5457084-5457112)
chr1 (210-262)||(38741478-38741530)
[»] scaffold0112 (1 HSPs)
scaffold0112 (210-272)||(36054-36116)
[»] chr5 (29 HSPs)
chr5 (213-272)||(33750911-33750970)
chr5 (210-252)||(15061825-15061867)
chr5 (210-267)||(9751678-9751735)
chr5 (210-267)||(31312773-31312830)
chr5 (210-262)||(26888459-26888511)
chr5 (217-272)||(11438332-11438387)
chr5 (234-276)||(42853759-42853802)
chr5 (216-270)||(4060454-4060508)
chr5 (210-248)||(11957650-11957688)
chr5 (234-272)||(12148252-12148290)
chr5 (210-252)||(13948584-13948626)
chr5 (218-252)||(15615116-15615150)
chr5 (210-252)||(28819549-28819591)
chr5 (210-248)||(41064162-41064200)
chr5 (234-267)||(4413925-4413958)
chr5 (219-252)||(5984004-5984037)
chr5 (216-245)||(11439805-11439834)
chr5 (234-267)||(25962800-25962833)
chr5 (234-267)||(37082300-37082333)
chr5 (216-265)||(40433991-40434040)
chr5 (1-29)||(186373-186401)
chr5 (219-267)||(16920667-16920715)
chr5 (234-262)||(21039868-21039896)
chr5 (82-118)||(23035139-23035175)
chr5 (1-33)||(26889583-26889615)
chr5 (216-252)||(30796592-30796628)
chr5 (234-262)||(31920063-31920091)
chr5 (234-262)||(37217546-37217574)
chr5 (210-262)||(37274751-37274803)
[»] scaffold0210 (1 HSPs)
scaffold0210 (210-248)||(4725-4763)
[»] chr8 (21 HSPs)
chr8 (210-252)||(27164660-27164702)
chr8 (210-267)||(25653702-25653759)
chr8 (234-270)||(4335008-4335044)
chr8 (210-262)||(34901505-34901557)
chr8 (216-262)||(5625850-5625896)
chr8 (220-262)||(28561437-28561479)
chr8 (220-262)||(28566935-28566977)
chr8 (210-252)||(39513880-39513922)
chr8 (210-248)||(39810088-39810126)
chr8 (210-248)||(42348979-42349017)
chr8 (210-248)||(42350179-42350217)
chr8 (217-262)||(6105558-6105603)
chr8 (234-267)||(13572538-13572571)
chr8 (233-262)||(36343149-36343178)
chr8 (234-267)||(38711966-38711999)
chr8 (210-247)||(39808666-39808703)
chr8 (210-262)||(26711351-26711403)
chr8 (234-262)||(34227330-34227358)
chr8 (219-267)||(34375143-34375191)
chr8 (218-262)||(35322474-35322518)
chr8 (210-270)||(41708823-41708883)
[»] scaffold0804 (1 HSPs)
scaffold0804 (210-247)||(2752-2789)
[»] scaffold0933 (1 HSPs)
scaffold0933 (216-271)||(2726-2781)
[»] scaffold0250 (1 HSPs)
scaffold0250 (210-252)||(10093-10135)
[»] scaffold0129 (1 HSPs)
scaffold0129 (237-270)||(30716-30749)
[»] scaffold0002 (1 HSPs)
scaffold0002 (234-275)||(332055-332096)
[»] scaffold0085 (1 HSPs)
scaffold0085 (234-262)||(25287-25315)
[»] scaffold0022 (1 HSPs)
scaffold0022 (234-262)||(63375-63403)
[»] scaffold0004 (1 HSPs)
scaffold0004 (234-262)||(212516-212544)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 33440896 - 33440761
Alignment:
Q  235 tatattacagggggtaaaacactattaatccttaaattattggagtttagcttgggatcttggagtttcccacttgggttggcatgttgttggcttggga 334  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33440896 tatattacagggggtaaaacattattaactcttaaattattggagtttagcttgggatcttggagtttcccacttgggtaggcatgttgttggcttggga 33440797  T
Q  335 tttttggagtttgctcctcctcaatgtttcatgttc 370  Q
    ||||||||||||||||||||| ||  ||||||||||    
T  33440796 tttttggagtttgctcctcctaaagatttcatgttc 33440761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 42509040 - 42509098
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctta 268  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  42509040 acagggggcaaaaccaaaagtgccctatattacagagggtaaaacactattaaccctta 42509098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 9553455 - 9553395
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaa 270  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||| |||||||    
T  9553455 acaggaggcaaaaccaaaagtgccctatattacagggggtaaagacctattaacccttaaa 9553395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 1594127 - 1594189
Alignment:
Q  211 caggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaatta 273  Q
    |||||||||||||||||||||  |||||||||||||||||||   ||||||| |||| |||||    
T  1594127 caggaggcaaaaccaaaagtgacctatattacagggggtaaagacctattaaccctttaatta 1594189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 20164449 - 20164490
Alignment:
Q  234 ctatattacagggggtaaaacactattaatccttaaattatt 275  Q
    ||||||||||||||||||||||||||||| |||||| |||||    
T  20164449 ctatattacagggggtaaaacactattaacccttaatttatt 20164490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 8174939 - 8174897
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    |||||| |||||||||||| ||| |||||||||||||||||||    
T  8174939 acaggatgcaaaaccaaaaatgccctatattacagggggtaaa 8174897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 10068099 - 10068129
Alignment:
Q  235 tatattacagggggtaaaacactattaatcc 265  Q
    |||||||||||||||||||||||||||||||    
T  10068099 tatattacagggggtaaaacactattaatcc 10068129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 11058172 - 11058210
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  11058172 acaggaggcaaaaccaaaagtaccctatattacaggggg 11058210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 48168905 - 48168863
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||    
T  48168905 acagggggcaaaaccaaaagtgccctatattacagagggtaaa 48168863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 1831990 - 1832043
Alignment:
Q  219 aaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaatt 272  Q
    |||| ||||||||| ||||||||||||||||||| | ||||||| |||| ||||    
T  1831990 aaaatcaaaagtgccctatattacagggggtaaagccctattaaccctttaatt 1832043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 12005295 - 12005262
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  12005295 ctatattacagggggtaaaacactattaaccctt 12005262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 19336098 - 19336041
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    ||||| || |||||||||| ||  ||||||||||||||||||||||| ||||| ||||    
T  19336098 acaggggggaaaaccaaaaatgacctatattacagggggtaaaacaccattaaccctt 19336041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 21444209 - 21444242
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  21444209 ctatattacagggggtaaaacactattaaccctt 21444242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 24233636 - 24233673
Alignment:
Q  234 ctatattacagggggtaaaacactattaatccttaaat 271  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  24233636 ctatattatagggggtaaaacactattaacccttaaat 24233673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 34158113 - 34158076
Alignment:
Q  211 caggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  34158113 cagggggcaaaaccaaaagtgccctatattacaggggg 34158076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 442878 - 442906
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  442878 ctatattacagggggtaaaacactattaa 442906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 10975868 - 10975896
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  10975868 ctatattacagggggtaaaacactattaa 10975896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 24478055 - 24478027
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  24478055 ctatattacagggggtaaaacactattaa 24478027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 41380730 - 41380758
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  41380730 ctatattacagggggtaaaacactattaa 41380758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 119 - 267
Target Start/End: Original strand, 45161290 - 45161439
Alignment:
Q  119 cacgtcagtgtcacataagagattctgttgagtcatatggnnnnnnnggagagtctatattttacaaggacggaatccaaaac--nnnnnnnnacaggag 216  Q
    |||||||||| |||||||||||||||| ||||||||||||       ||||| ||||||||||||||||||||||||||||||          |||||||    
T  45161290 cacgtcagtgccacataagagattctgctgagtcatatggcttttctggagaatctatattttacaaggacggaatccaaaacttttttttttacaggag 45161389  T
Q  217 gcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| ||||    
T  45161390 gcaaaaccaaaagtgccctatattaca-ggggtaaaacactattaaccctt 45161439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 8238044 - 8237987
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  8238044 acagggggcaaaaccaaaagtgttctatattacatggggtaaaacactattaaccctt 8237987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 19686187 - 19686240
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaa 269  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||    
T  19686187 ggcaaaaccaaaagtgccctatattacagggggtaaagcactattaacccttaa 19686240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 16670554 - 16670512
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  16670554 acagggggcaaaaccaaaagtgccctatattacagggggtaaa 16670512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 5969780 - 5969728
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||||||||||||||||||| | |||||||||||||| |||| | |||||||    
T  5969780 acaggaggcaaaaccaaaagtaccctatattacaggggataaagctctattaa 5969728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 19299771 - 19299815
Alignment:
Q  219 aaaaccaaaagtgctctatattacagggggt-aaaacactattaa 262  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  19299771 aaaaccaaaagtgctctatattacaggggctaaaaacactattaa 19299815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 38937516 - 38937552
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||||||||||||||| |||||||||||||||||||    
T  38937516 ggcaaaaccaaaagtgccctatattacagggggtaaa 38937552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 23834670 - 23834599
Alignment:
Q  177 attttacaaggacggaatccaaaacnnnnnnnnacaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||||||||||||||||| ||||         ||||| ||||||||||||||||| |||||||||||||||    
T  23834670 attttacaaggacggaatctaaaaaaaaaaattacagggggcaaaaccaaaagtgccctatattacaggggg 23834599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 269
Target Start/End: Original strand, 26498854 - 26498889
Alignment:
Q  234 ctatattacagggggtaaaacactattaatccttaa 269  Q
    |||||| |||||||||||||||||||||||||||||    
T  26498854 ctatatgacagggggtaaaacactattaatccttaa 26498889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 31551956 - 31551901
Alignment:
Q  219 aaaaccaaaagtgctctatattac-agggggtaaaacactattaatccttaaatta 273  Q
    |||||||||||||||||||||||| |||||||||| | ||||||| ||| ||||||    
T  31551956 aaaaccaaaagtgctctatattacaagggggtaaagctctattaaccctaaaatta 31551901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 1902986 - 1902948
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  1902986 acagggggcaaaaccaaaagtgccctatattacaggggg 1902948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 1904410 - 1904448
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  1904410 acagggggcaaaaccaaaagtgccctatattacaggggg 1904448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 7576381 - 7576343
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  7576381 acagggggcaaaaccaaaagtgccctatattacaggggg 7576343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 11102176 - 11102225
Alignment:
Q  219 aaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaa 269  Q
    |||||||||||| | |||||||||| |||||||||| ||||||||||||||    
T  11102176 aaaaccaaaagtaccctatattaca-ggggtaaaactctattaatccttaa 11102225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 18250891 - 18250929
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  18250891 acaggaggcaaaaccaaaaatgccctatattacaggggg 18250929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 23835774 - 23835816
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| |||||||| |||||||| |||||||||||||||||||    
T  23835774 acagggggcaaaactaaaagtgccctatattacagggggtaaa 23835816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 44242357 - 44242399
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||    
T  44242357 acagggggcaaaaccaaaagtgatctatattacaggaggtaaa 44242399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 1938268 - 1938301
Alignment:
Q  239 ttacagggggtaaaacactattaatccttaaatt 272  Q
    ||||||||||||||||||||||||||||| ||||    
T  1938268 ttacagggggtaaaacactattaatccttcaatt 1938301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 15747798 - 15747745
Alignment:
Q  218 caaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaat 271  Q
    ||||||||||||||  |||||||||||||||||||   ||||||| ||||||||    
T  15747798 caaaaccaaaagtgacctatattacagggggtaaaggtctattaacccttaaat 15747745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 28781964 - 28782001
Alignment:
Q  233 tctatattacagggggtaaaacactattaatccttaaa 270  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  28781964 tctatattacagggggtaaatcactattaacccttaaa 28782001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 36525618 - 36525651
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  36525618 ctatattacagggggtaaaacactattaaccctt 36525651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 38127794 - 38127761
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  38127794 ctatattacagggggtaaaacactattaaccctt 38127761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 10733920 - 10733956
Alignment:
Q  82 ttgaccccacttgttaaaatttctggatccgtccctg 118  Q
    ||||||||||||  |||||||||||||||||||||||    
T  10733920 ttgaccccactttctaaaatttctggatccgtccctg 10733956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 28141734 - 28141686
Alignment:
Q  219 aaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    |||||||||||||  |||||||||||||||||||   ||||||||||||    
T  28141734 aaaaccaaaagtgacctatattacagggggtaaagatctattaatcctt 28141686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 31989381 - 31989353
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  31989381 ctatattacagggggtaaaacactattaa 31989353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 36944035 - 36944003
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcct 266  Q
    ||||||||||||||||||||||| |||||||||    
T  36944035 ctatattacagggggtaaaacaccattaatcct 36944003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 38876044 - 38875984
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacag-ggggtaaaacactattaatccttaa 269  Q
    ||||| || |||||||||||||  ||||||||||| |||||||| | ||||||||||||||    
T  38876044 acagggggaaaaaccaaaagtgtcctatattacaggggggtaaagccctattaatccttaa 38875984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 38877023 - 38877075
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    |||||| | ||||||||||||||  |||||||||||||||||| | |||||||    
T  38877023 acaggaaggaaaaccaaaagtgccttatattacagggggtaaagccctattaa 38877075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 44366923 - 44366887
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggg 246  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  44366923 acagggggcaaaaccaaaagtgccctatattacaggg 44366887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 14183659 - 14183609
Alignment:
Q  217 gcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  14183659 gcaaaaccaaaagtgccctatattagagggggtaaaacactattaaccctt 14183609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 11861951 - 11861916
Alignment:
Q  217 gcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  11861951 gcaaaaccaaaagtgctctatattacagggggtaaa 11861916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 54554438 - 54554396
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  54554438 acagggggcaaaaccaaaagtgccctatattacagggggtaaa 54554396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 9410292 - 9410337
Alignment:
Q  218 caaaaccaaaagtgctctatattacag-ggggtaaaacactattaa 262  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  9410292 caaaaccaaaagtgccctatattacagaggggtaaaacactattaa 9410337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 20986045 - 20986110
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaattatt 275  Q
    ||||| |||||||| ||| |||   ||||||| |||||||||||||||||||| ||||||||||||    
T  20986045 acagggggcaaaacaaaaggtgtcatatattatagggggtaaaacactattaacccttaaattatt 20986110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 7086068 - 7086128
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaa 270  Q
    |||||||| ||||| |||| ||  ||||||||||||||||||||||| ||||| |||||||    
T  7086068 acaggagggaaaacaaaaaatgacctatattacagggggtaaaacaccattaacccttaaa 7086128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 44198646 - 44198611
Alignment:
Q  217 gcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||||||||||||| ||||||||||||||||||||    
T  44198646 gcaaaaccaaaagtggtctatattacagggggtaaa 44198611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 7985600 - 7985562
Alignment:
Q  80 atttgaccccacttgttaaaatttctggatccgtccctg 118  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  7985600 atttgaccccacatattaaaatttctggatccgtccctg 7985562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 9136406 - 9136448
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||    
T  9136406 acagggggcaaaaccaaaagtgatctatattacaggggataaa 9136448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 20962249 - 20962207
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| |||||||||||||||||  ||||||||||||||||||    
T  20962249 acagggggcaaaaccaaaagtgccatatattacagggggtaaa 20962207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 34027196 - 34027238
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  34027196 acagggggcaaaaccaaaagtgacctatattacagggggtaaa 34027238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 34741395 - 34741433
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  34741395 acagggggcaaaaccaaaagtgccctatattacaggggg 34741433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 41325533 - 41325591
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattaca-gggggtaaaacactattaatcctt 267  Q
    |||||||| |||||| ||| || ||||||||||| ||||||||||||||||||| ||||    
T  41325533 acaggaggtaaaaccgaaaatgatctatattacaggggggtaaaacactattaaccctt 41325591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 43860915 - 43860957
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||    
T  43860915 acaggagacaaaaccaaaagtgccctatattacaggaggtaaa 43860957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 50881424 - 50881466
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  50881424 acagggggcaaaaccaaaagtggcctatattacagggggtaaa 50881466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 52264494 - 52264444
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcct 266  Q
    ||||||| ||||||||  ||||||||| |||||||||||||||||| ||||    
T  52264494 ggcaaaatcaaaagtggcctatattacggggggtaaaacactattagtcct 52264444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 54555353 - 54555395
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| |||||||||||||||||  ||||||||||||||||||    
T  54555353 acagggggcaaaaccaaaagtgccatatattacagggggtaaa 54555395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 24560717 - 24560774
Alignment:
Q  214 gaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaat 271  Q
    |||| ||||| |||| || ||||||||||| |||||||||||| ||||||||| ||||    
T  24560717 gaggaaaaacaaaaaatgatctatattacaaggggtaaaacaccattaatcctaaaat 24560774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 51754210 - 51754259
Alignment:
Q  218 caaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||| | ||||||||||||||||||| | ||||||| ||||    
T  51754210 caaaaccaaaagtaccctatattacagggggtaaagctctattaaccctt 51754259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 7913457 - 7913493
Alignment:
Q  235 tatattacagggggtaaaacactattaatccttaaat 271  Q
    |||||||||||||||||||||||||||| || |||||    
T  7913457 tatattacagggggtaaaacactattaacccataaat 7913493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 10718155 - 10718199
Alignment:
Q  219 aaaaccaaaagtgctctatattaca-gggggtaaaacactattaa 262  Q
    |||||||||| || ||||||||||| |||||||||||||||||||    
T  10718155 aaaaccaaaaatgatctatattacaggggggtaaaacactattaa 10718199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 10931924 - 10931968
Alignment:
Q  219 aaaaccaaaagtgctctatattaca-gggggtaaaacactattaa 262  Q
    |||||||||| || ||||||||||| |||||||||||||||||||    
T  10931924 aaaaccaaaaatgatctatattacaggggggtaaaacactattaa 10931968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 12352463 - 12352503
Alignment:
Q  212 aggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    |||||| |||||||||||||  |||||||||||||||||||    
T  12352463 aggagggaaaaccaaaagtgacctatattacagggggtaaa 12352503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 14121587 - 14121615
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  14121587 ctatattacagggggtaaaacactattaa 14121615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 15694508 - 15694472
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    |||||||||||||||| | ||||||||||||||||||    
T  15694508 ggcaaaaccaaaagtggtgtatattacagggggtaaa 15694472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 16291416 - 16291460
Alignment:
Q  218 caaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    |||| |||||| || |||||||||||||| |||||||||||||||    
T  16291416 caaacccaaaaatgatctatattacagggtgtaaaacactattaa 16291460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 19909351 - 19909379
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  19909351 ctatattacagggggtaaaacactattaa 19909379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 23657001 - 23657052
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctta 268  Q
    |||||||  |||| ||||| |||||||||||| ||||||||||||||||||||    
T  23657001 ggcaaaataaaaaatgctcaatattacagggg-taaaacactattaatcctta 23657052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 26144213 - 26144153
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaa 270  Q
    |||||||| ||||| |||| ||  ||||||||||||||||||| ||| ||||| |||||||    
T  26144213 acaggagggaaaacaaaaaatgacctatattacagggggtaaagcaccattaacccttaaa 26144153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 27627008 - 27627036
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  27627008 ctatattacagggggtaaaacactattaa 27627036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 29104190 - 29104162
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  29104190 ctatattacagggggtaaaacactattaa 29104162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 31226525 - 31226553
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  31226525 ctatattacagggggtaaaacactattaa 31226553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 31856924 - 31856892
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcct 266  Q
    ||||||||||| |||||||||||||||||||||    
T  31856924 ctatattacagagggtaaaacactattaatcct 31856892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 49300768 - 49300740
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  49300768 ctatattacagggggtaaaacactattaa 49300740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 51902101 - 51902049
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    |||||||| |||||||||| |   ||||||||||||||||||||||| |||||    
T  51902101 acaggagggaaaaccaaaaataacctatattacagggggtaaaacaccattaa 51902049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 46597510 - 46597552
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  46597510 acaggaggcaaaaccaaaagtgccctatattacagggggtaaa 46597552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 3190636 - 3190685
Alignment:
Q  218 caaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  3190636 caaaaccaaaagtggcctatattacagggggtaaaacagtattaatcctt 3190685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 18142199 - 18142262
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaatta 273  Q
    ||||| ||||||||||||||||  |||||||||||||||||||   ||||||| ||||||||||    
T  18142199 acagggggcaaaaccaaaagtgacctatattacagggggtaaaggcctattaacccttaaatta 18142262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 10615330 - 10615288
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  10615330 acagggggcaaaaccaaaagtgccctatattacagggggtaaa 10615288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 46610064 - 46610022
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  46610064 acagggggcaaaaccaaaagtgccctatattacagggggtaaa 46610022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 3207561 - 3207601
Alignment:
Q  218 caaaaccaaaagtgctctatattacagggggtaaaacacta 258  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  3207561 caaaaccaaaagtggcctatattacagggggtaaaacacta 3207601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 14826077 - 14826129
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||| ||||||||||||||||    |||||||||||||||||||||||||||    
T  14826077 acagggggcaaaaccaaaagtgacaaatattacagggggtaaaacactattaa 14826129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 24910939 - 24910975
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    |||||||||||||||| ||||||||||||||||||||    
T  24910939 ggcaaaaccaaaagtgatctatattacagggggtaaa 24910975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 7248920 - 7248861
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaa 269  Q
    ||||| ||||||||||||| || ||||||||||||||||||||   ||||||| ||||||    
T  7248920 acagggggcaaaaccaaaaatgatctatattacagggggtaaaggcctattaacccttaa 7248861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 12066278 - 12066223
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaat 271  Q
    ||||||| ||||||||  |||||||||||||||||||| |||||||| ||| ||||    
T  12066278 ggcaaaatcaaaagtgacctatattacagggggtaaaaaactattaaccctaaaat 12066223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 12072872 - 12072923
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||  ||||||||| |||||||||||| |||||| ||||    
T  12072872 ggcaaaaccaaaagtgacctatattacggggggtaaaacattattaaccctt 12072923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 35434074 - 35434133
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaa 269  Q
    |||||||| |||||||||| ||  ||||||||||||||||||| ||| ||||| ||||||    
T  35434074 acaggagggaaaaccaaaaatgacctatattacagggggtaaagcaccattaacccttaa 35434133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 268
Target Start/End: Complemental strand, 37976069 - 37975966
Alignment:
Q  166 ggagagtctatattttacaaggacggaatccaaaacnnnnnnnnacaggaggcaaaaccaaaagtgctctatattacag-ggggtaaaacactattaatc 264  Q
    ||||| ||| |||||||||||||||||||| ||||         | ||| ||||||||||||||| | ||||||||||| |||||||||| ||||||| |    
T  37976069 ggagaatctttattttacaaggacggaatctaaaaaaaaaatttatagggggcaaaaccaaaagtaccctatattacaggggggtaaaactctattaacc 37975970  T
Q  265 ctta 268  Q
    ||||    
T  37975969 ctta 37975966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 52396454 - 52396497
Alignment:
Q  219 aaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||||| |||||||||||||||||||||||||| | |||||||    
T  52396454 aaaaccagaagtgctctatattacagggggtaaagccctattaa 52396497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 10616775 - 10616813
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  10616775 acagggggcaaaaccaaaagtgccctatattacaggggg 10616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 12210077 - 12210031
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||||||||||||||  ||||||||||||||||||||  |||||||    
T  12210077 ggcaaaaccaaaagtgacctatattacagggggtaaaagtctattaa 12210031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 15086278 - 15086240
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  15086278 acagggggcaaaaccaaaagtgccctatattacaggggg 15086240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 29184983 - 29185025
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||||||||||||||||||||  ||||||||||||| |||||    
T  29184983 acaggaggcaaaaccaaaagtgacctatattacagggagtaaa 29185025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 37977508 - 37977550
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  37977508 acagggggcaaaaccaaaagtgtcctatattacagggggtaaa 37977550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 39708624 - 39708662
Alignment:
Q  82 ttgaccccacttgttaaaatttctggatccgtccctgca 120  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  39708624 ttgaccccgcttattaaaatttctggatccgtccctgca 39708662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 48044329 - 48044287
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||    
T  48044329 acagggggcaaaaccaaaagtgccctatatcacagggggtaaa 48044287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 17261080 - 17261023
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    |||||||| |||||||||| ||  ||||||||||||||||||| ||| ||||| ||||    
T  17261080 acaggagggaaaaccaaaaatgacctatattacagggggtaaagcaccattaaccctt 17261023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 2985838 - 2985870
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcct 266  Q
    ||||||||||| |||||||||||||||||||||    
T  2985838 ctatattacagagggtaaaacactattaatcct 2985870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 14004608 - 14004636
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  14004608 ctatattacagggggtaaaacactattaa 14004636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 18140988 - 18140936
Alignment:
Q  217 gcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaa 269  Q
    |||||||||||||||  |||||||||||||||||||   ||||||| ||||||    
T  18140988 gcaaaaccaaaagtgacctatattacagggggtaaaggcctattaacccttaa 18140936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 19111268 - 19111312
Alignment:
Q  219 aaaaccaaaagtgctctatattaca-gggggtaaaacactattaa 262  Q
    |||||||||||||  |||||||||| |||||||||||||||||||    
T  19111268 aaaaccaaaagtgacctatattacaggggggtaaaacactattaa 19111312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 23626263 - 23626291
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  23626263 ctatattacagggggtaaaacactattaa 23626291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 26769952 - 26769924
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  26769952 ctatattacagggggtaaaacactattaa 26769924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 46596142 - 46596098
Alignment:
Q  218 caaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||||||||||| | ||||||||||||||||||| | |||||||    
T  46596142 caaaaccaaaagtaccctatattacagggggtaaagctctattaa 46596098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 54567751 - 54567787
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||||||||||||||  |||||||||||||||||||    
T  54567751 ggcaaaaccaaaagtgacctatattacagggggtaaa 54567787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 11425770 - 11425827
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    |||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||    
T  11425770 acaggagggaaaactaaaagtgccctatattacaggggataaaacactattaaccctt 11425827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 6000682 - 6000725
Alignment:
Q  219 aaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||||||| | |||||||    
T  6000682 aaaaccaaaagtgctctatattacagggggtaaagctctattaa 6000725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 28583593 - 28583550
Alignment:
Q  219 aaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  28583593 aaaaccaaaagtgccctatattacacggggtaaaacactattaa 28583550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 26475818 - 26475761
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    |||||||| |||||||||| ||  |||||||||| |||||||||||||||||| ||||    
T  26475818 acaggaggtaaaaccaaaaatgacctatattacaaggggtaaaacactattaaccctt 26475761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 34022804 - 34022861
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    |||||||  |||||||||||||| ||||||||||||||  ||||||||||||| ||||    
T  34022804 acaggagttaaaaccaaaagtgcactatattacaggggcaaaaacactattaaccctt 34022861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 3063491 - 3063545
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaa 270  Q
    ||||||||||||||||  |||||||||||||||||||   ||||||| |||||||    
T  3063491 ggcaaaaccaaaagtgacctatattacagggggtaaagacctattaacccttaaa 3063545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 12321618 - 12321580
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  12321618 acaggaggcaaaaccaaaagtaccctatattacaggggg 12321580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 14328648 - 14328690
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  14328648 acagggggcaaaaccaaaagtgacctatattacagggggtaaa 14328690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 14421658 - 14421700
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  14421658 acagggggcaaaaccaaaagtgacctatattacagggggtaaa 14421700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 22058280 - 22058318
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  22058280 acagggggcaaaaccaaaagtgccctatattacaggggg 22058318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 10545862 - 10545829
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  10545862 ctatattacagggggtaaaacactattaaccctt 10545829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 20504163 - 20504130
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  20504163 ctatattacagggggtaaaacactattaaacctt 20504130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 8238002 - 8238030
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  8238002 ctatattacagggggtaaaacactattaa 8238030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 22056538 - 22056502
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggg 246  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  22056538 acagggggcaaaaccaaaagtgccctatattacaggg 22056502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 26097029 - 26097090
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaat 271  Q
    ||||||||||||||||||||||  |||||||||||||||||||   ||||||| ||||||||    
T  26097029 acaggaggcaaaaccaaaagtgacctatattacagggggtaaagacctattaacccttaaat 26097090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 4487594 - 4487531
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattac-agggggtaaaacactattaatccttaaatt 272  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||| |||||| ||| |||||    
T  4487594 acagggggcaaaactaaaagtgctctatattacaagggggtaaaacattattaaccctaaaatt 4487531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 24545511 - 24545452
Alignment:
Q  211 caggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaa 270  Q
    |||||||||||||||||||||  |||||||| |||||||||||  ||||||| |||||||    
T  24545511 caggaggcaaaaccaaaagtgacctatattatagggggtaaaagcctattaacccttaaa 24545452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 33934726 - 33934635
Alignment:
Q  177 attttacaaggacggaatccaaaacnnnnnnnnacaggaggcaaaaccaaaagtgctctatattacagggg-gtaaaacactattaatcctt 267  Q
    |||||||||||||| |||| |||||        ||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||    
T  33934726 attttacaaggacgaaatctaaaacttttttttacagggggcaaaaccaaaagtgatctatattacaggggcgtaaaaccctattaaccctt 33934635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 4488719 - 4488765
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  4488719 ggcaaaaccaaaagtgttctatattatagggggtaaaacaatattaa 4488765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 8985817 - 8985863
Alignment:
Q  218 caaaaccaaaagtgctctatattacagggggtaaaacactattaatc 264  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||    
T  8985817 caaaactaaaagtgtcctatattacagggggtaaaacactattaatc 8985863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 10338729 - 10338675
Alignment:
Q  65 tatttatagtaaataattt-gaccccacttgttaaaatttctggatccgtccctg 118  Q
    ||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||    
T  10338729 tatttatagtaaataattttgatcccacttattaaaatttatggatccgtccctg 10338675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 23322611 - 23322649
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  23322611 acagggggcaaaaccaaaagtgctctatattacaggggg 23322649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 14626780 - 14626817
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggg 247  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  14626780 acaggaggcaaaaccaaaagtgccctatattacagggg 14626817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 9442997 - 9443029
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacaggggg 248  Q
    |||||||||||||||||||||||||||||||||    
T  9442997 ggcaaaaccaaaagtgctctatattacaggggg 9443029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 13903375 - 13903415
Alignment:
Q  212 aggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  13903375 aggaggcaaaaccaaaagtgacctatattacagggggtaaa 13903415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 43635884 - 43635848
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||||||||||||||| |||||||||||||||||||    
T  43635884 ggcaaaaccaaaagtgccctatattacagggggtaaa 43635848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 47839987 - 47840019
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcct 266  Q
    |||||||||||||||||||||||||||||||||    
T  47839987 ctatattacagggggtaaaacactattaatcct 47840019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 1825349 - 1825307
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  1825349 acagggggcaaaaccaaaagtgacctatattacagggggtaaa 1825307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 14625425 - 14625383
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  14625425 acagggggcaaaaccaaaagtgtcctatattacagggggtaaa 14625383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 26399200 - 26399234
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctta 268  Q
    ||||||||||||||||||||||||||||| |||||    
T  26399200 ctatattacagggggtaaaacactattaaccctta 26399234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 31883483 - 31883445
Alignment:
Q  235 tatattacagggggtaaaacactattaatccttaaatta 273  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  31883483 tatattacagggggtaaaacactattaaccctaaaatta 31883445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 52084835 - 52084865
Alignment:
Q  218 caaaaccaaaagtgctctatattacaggggg 248  Q
    |||||||||||||||||||||||||||||||    
T  52084835 caaaaccaaaagtgctctatattacaggggg 52084865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 972887 - 972830
Alignment:
Q  219 aaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaattattg 276  Q
    |||||||||| ||  ||||||||||||||||||||||| ||||| || || |||||||    
T  972887 aaaaccaaaaatgacctatattacagggggtaaaacaccattaacccatatattattg 972830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 5560920 - 5560891
Alignment:
Q  219 aaaaccaaaagtgctctatattacaggggg 248  Q
    ||||||||||||||||||||||||||||||    
T  5560920 aaaaccaaaagtgctctatattacaggggg 5560891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 7780223 - 7780260
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggg 247  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  7780223 acagggggcaaaaccaaaagtgatctatattacagggg 7780260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 8930356 - 8930405
Alignment:
Q  218 caaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||| |  |||||||||||||||||||| ||||||| ||||    
T  8930356 caaaaccaaaagtaccttatattacagggggtaaaactctattaaccctt 8930405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 10611822 - 10611789
Alignment:
Q  236 atattacagggggtaaaacactattaatccttaa 269  Q
    ||||||||||||||||||||||||||| ||||||    
T  10611822 atattacagggggtaaaacactattaacccttaa 10611789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 30537529 - 30537566
Alignment:
Q  225 aaaagtgctctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||  |||||||||||||||    
T  30537529 aaaagtgctctatattacaggaagtaaaacactattaa 30537566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 40372830 - 40372793
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggg 247  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  40372830 acaggagggaaaatcaaaagtgctctatattacagggg 40372793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 1048014 - 1047986
Alignment:
Q  1 tataattagggacggagggagtatatact 29  Q
    |||||||||||||||||||||||||||||    
T  1048014 tataattagggacggagggagtatatact 1047986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 5457112 - 5457084
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  5457112 ctatattacagggggtaaaacactattaa 5457084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 38741530 - 38741478
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||| ||||||||||||||||   ||||||||||||| ||||||| ||||||    
T  38741530 acagggggcaaaaccaaaagtgtcttatattacaggggttaaaacattattaa 38741478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 36116 - 36054
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacag-ggggtaaaacactattaatccttaaatt 272  Q
    |||| ||||||||||||||||| | |||||||||| |||||||||||||||||| |||||||||    
T  36116 acagaaggcaaaaccaaaagtgttttatattacagaggggtaaaacactattaa-ccttaaatt 36054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 33750970 - 33750911
Alignment:
Q  213 ggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaatt 272  Q
    |||| ||||| |||||||||||||||||||| ||| |||||||||||||| |||| ||||    
T  33750970 ggagacaaaatcaaaagtgctctatattacaagggttaaaacactattaaccctttaatt 33750911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 15061825 - 15061867
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  15061825 acagggggcaaaaccaaaagtgccctatattacagggggtaaa 15061867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 9751678 - 9751735
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||  ||||||| ||||    
T  9751678 acagggggcaaaaccaaaagtgacctatattacagggggtaaaagcctattaaccctt 9751735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 31312773 - 31312830
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    |||||||| |||||| ||| ||  ||||||||||||||||||||||||||||| ||||    
T  31312773 acaggaggtaaaaccgaaaatgacctatattacagggggtaaaacactattaaccctt 31312830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 26888459 - 26888511
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||| ||||||||||||||||  |||||||| || |||||||||||||||||    
T  26888459 acagggggcaaaaccaaaagtgacctatattatagagggtaaaacactattaa 26888511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 11438387 - 11438332
Alignment:
Q  217 gcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaatt 272  Q
    |||||||||||||| | ||||||||||||||||||| | ||||||| ||| |||||    
T  11438387 gcaaaaccaaaagtaccctatattacagggggtaaagctctattaaccctaaaatt 11438332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 42853802 - 42853759
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcct-taaattattg 276  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  42853802 ctatatcacagggggtaaaacactattaatcctgtaaattattg 42853759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 4060508 - 4060454
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaa 270  Q
    ||||||||||| ||| |||||||||| |||||||||| | ||||||| |||||||    
T  4060508 ggcaaaaccaagagtactctatattagagggggtaaagctctattaacccttaaa 4060454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 11957650 - 11957688
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  11957650 acagggggcaaaaccaaaagtgccctatattacaggggg 11957688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 12148252 - 12148290
Alignment:
Q  234 ctatattacagggggtaaaacactattaatccttaaatt 272  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  12148252 ctatattacagggggtaaaacactattaaccctttaatt 12148290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 13948584 - 13948626
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||    
T  13948584 acagggggcaaaaccaaaagtgccctatattacaggaggtaaa 13948626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 15615150 - 15615116
Alignment:
Q  218 caaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||||||||||||| |||||||||||||||||||    
T  15615150 caaaaccaaaagtgccctatattacagggggtaaa 15615116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 28819591 - 28819549
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  28819591 acagggggcaaaaccaaaagtgacctatattacagggggtaaa 28819549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 41064200 - 41064162
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  41064200 acagggggcaaaaccaaaagtgccctatattacaggggg 41064162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 4413958 - 4413925
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  4413958 ctatattacagggggtaaaacactattaaccctt 4413925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 5984004 - 5984037
Alignment:
Q  219 aaaaccaaaagtgctctatattacagggggtaaa 252  Q
    |||| |||||||||||||||||||||||||||||    
T  5984004 aaaatcaaaagtgctctatattacagggggtaaa 5984037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 11439805 - 11439834
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagg 245  Q
    ||||||||||||||||||||||||||||||    
T  11439805 ggcaaaaccaaaagtgctctatattacagg 11439834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 25962833 - 25962800
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  25962833 ctatattacagggggtaaaacactattaaccctt 25962800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 37082300 - 37082333
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  37082300 ctatattacagggggtaaaacactattaaccctt 37082333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 40434040 - 40433991
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcc 265  Q
    ||||||| ||||||||| |||||||||||| |||||||  ||||||||||    
T  40434040 ggcaaaatcaaaagtgccctatattacaggaggtaaaagtctattaatcc 40433991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 186373 - 186401
Alignment:
Q  1 tataattagggacggagggagtatatact 29  Q
    |||||||||||||||||||||||||||||    
T  186373 tataattagggacggagggagtatatact 186401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 16920667 - 16920715
Alignment:
Q  219 aaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||| || || |||||||||||||||||||| ||||||||| ||||    
T  16920667 aaaaccagaaatgatctatattacagggggtaaagcactattaaccctt 16920715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 21039896 - 21039868
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  21039896 ctatattacagggggtaaaacactattaa 21039868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 23035175 - 23035139
Alignment:
Q  82 ttgaccccacttgttaaaatttctggatccgtccctg 118  Q
    |||||||||| | ||||||||||||||||||||||||    
T  23035175 ttgaccccacatattaaaatttctggatccgtccctg 23035139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26889615 - 26889583
Alignment:
Q  1 tataattagggacggagggagtatatactttta 33  Q
    ||||||||||||||||||||||||||| |||||    
T  26889615 tataattagggacggagggagtatatattttta 26889583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 30796628 - 30796592
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  30796628 ggcaaaaccaaaagtgccctatattatagggggtaaa 30796592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 31920091 - 31920063
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  31920091 ctatattacagggggtaaaacactattaa 31920063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 37217546 - 37217574
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  37217546 ctatattacagggggtaaaacactattaa 37217574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 37274803 - 37274751
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||| ||||||||||||||| | |||||||| |||||||||| | |||||||    
T  37274803 acagggggcaaaaccaaaagtaccctatattatagggggtaaagctctattaa 37274751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 4763 - 4725
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  4763 acaggaggcaaaaccaaaagtgccctatattacaggggg 4725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 27164660 - 27164702
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  27164660 acagggggcaaaaccaaaagtgccctatattacagggggtaaa 27164702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 25653759 - 25653702
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    ||||| || |||||||||| ||  ||||||||||||||||||||||||||||| ||||    
T  25653759 acaggggggaaaaccaaaaatgacctatattacagggggtaaaacactattaaccctt 25653702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 4335008 - 4335044
Alignment:
Q  234 ctatattacagggggtaaaacactattaatccttaaa 270  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4335008 ctatattacagggggtaaaacactattaacccttaaa 4335044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 34901557 - 34901505
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||  |||||||    
T  34901557 acagggggcaaaaccaaaagtgacctatattacagggggtaaaagcctattaa 34901505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 5625850 - 5625896
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||||| ||||||||||| ||||||||| | |||||||||||||||    
T  5625850 ggcaaaatcaaaagtgctccatattacagagagtaaaacactattaa 5625896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 28561479 - 28561437
Alignment:
Q  220 aaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||||||||||| ||||||||||||||||||| | |||||||    
T  28561479 aaaccaaaagtgccctatattacagggggtaaagctctattaa 28561437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 28566977 - 28566935
Alignment:
Q  220 aaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    ||||||||||||| ||||||||||||||||||| | |||||||    
T  28566977 aaaccaaaagtgccctatattacagggggtaaagctctattaa 28566935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 39513922 - 39513880
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  39513922 acagggggcaaaaccaaaagtgacctatattacagggggtaaa 39513880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 39810088 - 39810126
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  39810088 acagggggcaaaaccaaaagtgccctatattacaggggg 39810126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 42349017 - 42348979
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  42349017 acagggggcaaaaccaaaagtgccctatattacaggggg 42348979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 42350179 - 42350217
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacaggggg 248  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  42350179 acagggggcaaaaccaaaaatgctctatattacaggggg 42350217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 6105603 - 6105558
Alignment:
Q  217 gcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||    
T  6105603 gcaaaaccaaaagtgtcctatattgcacggggtaaaacactattaa 6105558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 13572571 - 13572538
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  13572571 ctatattacagggggtaaaacactattaaccctt 13572538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 36343178 - 36343149
Alignment:
Q  233 tctatattacagggggtaaaacactattaa 262  Q
    ||||||||||||||||||||||||||||||    
T  36343178 tctatattacagggggtaaaacactattaa 36343149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 38711966 - 38711999
Alignment:
Q  234 ctatattacagggggtaaaacactattaatcctt 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  38711966 ctatattacagggggtaaaacactattaaccctt 38711999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 39808703 - 39808666
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggg 247  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  39808703 acagggggcaaaaccaaaagtgccctatattacagggg 39808666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 26711403 - 26711351
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    |||||||| |||||||||| ||   |||||||||||||||||||||| |||||    
T  26711403 acaggagggaaaaccaaaaatgacatatattacagggggtaaaacaccattaa 26711351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 34227358 - 34227330
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  34227358 ctatattacagggggtaaaacactattaa 34227330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 34375143 - 34375191
Alignment:
Q  219 aaaaccaaaagtgctctatattacagggggtaaaacactattaatcctt 267  Q
    |||| |||||||| ||||||||||||||||||||   ||||||||||||    
T  34375143 aaaatcaaaagtgatctatattacagggggtaaagggctattaatcctt 34375191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 35322474 - 35322518
Alignment:
Q  218 caaaaccaaaagtgctctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||| ||||||||||||||| |||||  |||||||    
T  35322474 caaaaccaaaagtgatctatattacaggggataaaagcctattaa 35322518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 41708883 - 41708823
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaa 270  Q
    ||||| || |||||||||| ||  ||||||||||||||||||| ||| ||||| |||||||    
T  41708883 acagggggaaaaaccaaaaatgacctatattacagggggtaaagcaccattaacccttaaa 41708823  T

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Target: scaffold0804 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 2789 - 2752
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggg 247  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  2789 acaggaggcaaaaccaaaagtgccctatattacagggg 2752  T

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Target: scaffold0933 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 2726 - 2781
Alignment:
Q  216 ggcaaaaccaaaagtgctctatattacagggggtaaaacactattaatccttaaat 271  Q
    |||||| |||||||| | ||||||||||||||||||||| ||||||| || |||||    
T  2726 ggcaaatccaaaagtaccctatattacagggggtaaaactctattaacccataaat 2781  T

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Target: scaffold0250 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 10135 - 10093
Alignment:
Q  210 acaggaggcaaaaccaaaagtgctctatattacagggggtaaa 252  Q
    ||||| |||||||| |||||||| |||||||||||||||||||    
T  10135 acagggggcaaaactaaaagtgccctatattacagggggtaaa 10093  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 30749 - 30716
Alignment:
Q  237 tattacagggggtaaaacactattaatccttaaa 270  Q
    |||||||||||||||||||||||||| |||||||    
T  30749 tattacagggggtaaaacactattaacccttaaa 30716  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 332096 - 332055
Alignment:
Q  234 ctatattacagggggtaaaacactattaatccttaaattatt 275  Q
    |||||||||||||||||||||||||||||  ||| |||||||    
T  332096 ctatattacagggggtaaaacactattaactcttgaattatt 332055  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 25287 - 25315
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  25287 ctatattacagggggtaaaacactattaa 25315  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 63375 - 63403
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  63375 ctatattacagggggtaaaacactattaa 63403  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 212544 - 212516
Alignment:
Q  234 ctatattacagggggtaaaacactattaa 262  Q
    |||||||||||||||||||||||||||||    
T  212544 ctatattacagggggtaaaacactattaa 212516  T

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