View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_15 (Length: 334)
Name: NF10188_low_15
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 27986855 - 27987132
Alignment:
| Q |
17 |
taatgttcgaaaaaagagtaaatggagggaaagcgtgagagaggtgaagagttgctttgagtgactcactcatctgatgtgtcattttcttagccgtcat |
116 |
Q |
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| T |
27986855 |
taatgttcgaaaaaagagtaaatggagggaaagcgtgagagaggtgaagagttgctttgagtgactcactcatctgatgtgtcattttcttagccgtcat |
27986954 |
T |
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| Q |
117 |
tatcacgtaaaagtttcttacatcatttttattaaagtcaattaagttcttaattta-ttttttaagggaattaagttctttagagtcgtgctaagcggt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
27986955 |
tatcacgtaaaagtttcttacatcatttttattaaagtcaattaagttcttaatttatttttttaagggaattaagttctttagagtcatgctaagcggc |
27987054 |
T |
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| Q |
216 |
acccctatcccgacaaatgttcaagagatagaggtactggttaaagaagtcaaaagaaaaaaatttaagttaaaaata |
293 |
Q |
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| T |
27987055 |
atcccggtgctgacaaatgttcaagagacacaggtactagttaaagaagtcaaaagaaaaagttttaagtaaaaaata |
27987132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 28044157 - 28044434
Alignment:
| Q |
17 |
taatgttcgaaaaaagagtaaatggagggaaagcgtgagagaggtgaagagttgctttgagtgactcactcatctgatgtgtcattttcttagccgtcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28044157 |
taatgttcgaaaaaagagtaaatggagggaaagcgtgagagaggtgaagagttgctttgagtgactcactcatctgatgtgtcattttcttagccgtcat |
28044256 |
T |
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| Q |
117 |
tatcacgtaaaagtttcttacatcatttttattaaagtcaattaagttcttaattta-ttttttaagggaattaagttctttagagtcgtgctaagcggt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
28044257 |
tatcacgtaaaagtttcttacatcatttttattaaagtcaattaagttcttaatttatttttttaagggaattaagttctttagagtcatgctaagcggc |
28044356 |
T |
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| Q |
216 |
acccctatcccgacaaatgttcaagagatagaggtactggttaaagaagtcaaaagaaaaaaatttaagttaaaaata |
293 |
Q |
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| ||| | | ||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||| ||||||| |
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| T |
28044357 |
atcccggtgctgacaaatgttcaagagacacaggtactagttaaagaagtcaaaagaaaaagttttaagtaaaaaata |
28044434 |
T |
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