View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_17 (Length: 292)
Name: NF10188_low_17
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_17 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 25 - 277
Target Start/End: Original strand, 177762 - 178014
Alignment:
| Q |
25 |
ggaatcgcatagaagnnnnnnntgatttaattaactacaaagctttcctggaacaagaagagaaaaatattcgccattgttaccaaaagaagtttcctga |
124 |
Q |
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| T |
177762 |
ggaatcgcatagaagaaaaaaatgatttaattaactacaaagctttcctagaacaagaagagaaaaatattcgccattgttaccaaaagaagtttcctga |
177861 |
T |
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| Q |
125 |
tatcagccatgaacaatttgttgacatgatattgttggatgttgtgttcatcatggagctgttcttaagagaagctaaaaaatgggaacacaaagatgat |
224 |
Q |
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| T |
177862 |
tatcagccatgaacaatttgttgacatgatattgttggatgttgtgttcatcatggagctgtttttaagagaagctaaaaaatgggaacacaaagatgat |
177961 |
T |
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| Q |
225 |
tatatagtaactcaactttgtttaagtaaaaatattcagcatgacttgttgct |
277 |
Q |
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| T |
177962 |
tatatagtaactcaactttgtttaagtaaaaatattcagcatgacttgttgct |
178014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 47 - 277
Target Start/End: Complemental strand, 116003 - 115773
Alignment:
| Q |
47 |
tgatttaattaactacaaagctttcctggaacaagaagagaaaaatattcgccattgttaccaaaagaagtttcctgatatcagccatgaacaatttgtt |
146 |
Q |
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|||||| || |||||||||| |||||| ||||||||||| |||| || |||| |||||||||||||| || | ||||||| | ||| ||||| ||| |
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| T |
116003 |
tgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacagatatcaacagtgagcaattggtt |
115904 |
T |
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| Q |
147 |
gacatgatattgttggatgttgtgttcatcatggagctgttcttaagagaagctaaaaaatgggaacacaaagatgattatatagtaactcaactttgtt |
246 |
Q |
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| T |
115903 |
gacatgatactattggattctgtgttcatcatggagttgtttctaagagaaaataaaaaatgggagcacaaagatgattatataataactcaactttgtg |
115804 |
T |
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| Q |
247 |
taagtaaaaatattcagcatgacttgttgct |
277 |
Q |
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| T |
115803 |
taagtaaaagtatccagcgggatttgttgct |
115773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 47 - 255
Target Start/End: Original strand, 606474 - 606682
Alignment:
| Q |
47 |
tgatttaattaactacaaagctttcctggaacaagaagagaaaaatattcgccattgttaccaaaagaagtttcctgatatcagccatgaacaatttgtt |
146 |
Q |
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||||||||| ||||||||| ||||||| ||||||||||| | ||||||||||| |||||||| || | ||| |||||| ||||| ||||||||||| |
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| T |
606474 |
tgatttaatgaactacaaaactttccttgaacaagaagaacataatattcgccactgttaccagaaaatttttgttgatattagccagaaacaatttgtt |
606573 |
T |
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| Q |
147 |
gacatgatattgttggatgttgtgttcatcatggagctgttcttaagagaagctaaaaaatgggaacacaaagatgattatatagtaactcaactttgtt |
246 |
Q |
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| T |
606574 |
gatatgatactattggatgctgtgttcatcatggagttgtttcttagagagaaaaaaagatgggaacacaaagatgattacatagtaactcaacattgtg |
606673 |
T |
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| Q |
247 |
taagtaaaa |
255 |
Q |
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|||| |||| |
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| T |
606674 |
taagcaaaa |
606682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 47 - 262
Target Start/End: Complemental strand, 10395 - 10180
Alignment:
| Q |
47 |
tgatttaattaactacaaagctttcctggaacaagaagagaaaaatattcgccattgttaccaaaagaagtttcctgatatcagccatgaacaatttgtt |
146 |
Q |
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|||||| || |||||||||| || || |||||||||| | ||||| |||| ||||||||||||||||| |||||||||| |||||||| | ||| |
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| T |
10395 |
tgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagcaatgaacaaatggtt |
10296 |
T |
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| Q |
147 |
gacatgatattgttggatgttgtgttcatcatggagctgttcttaagagaagctaaaaaatgggaacacaaagatgattatatagtaactcaactttgtt |
246 |
Q |
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| T |
10295 |
gatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaagatgattatattataactcaactttgtg |
10196 |
T |
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| Q |
247 |
taagtaaaaatattca |
262 |
Q |
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| |||| || |||||| |
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| T |
10195 |
tgagtagaagtattca |
10180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 47 - 262
Target Start/End: Complemental strand, 23849 - 23634
Alignment:
| Q |
47 |
tgatttaattaactacaaagctttcctggaacaagaagagaaaaatattcgccattgttaccaaaagaagtttcctgatatcagccatgaacaatttgtt |
146 |
Q |
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|||||| || |||||||||| || || |||||||||| | ||||| |||| ||||||||||||||||| |||||||||| |||||||| | ||| |
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| T |
23849 |
tgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagcaatgaacaaatggtt |
23750 |
T |
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| Q |
147 |
gacatgatattgttggatgttgtgttcatcatggagctgttcttaagagaagctaaaaaatgggaacacaaagatgattatatagtaactcaactttgtt |
246 |
Q |
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| T |
23749 |
gatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaagatgattatattataactcaactttgtg |
23650 |
T |
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| Q |
247 |
taagtaaaaatattca |
262 |
Q |
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| |||| || |||||| |
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| T |
23649 |
tgagtagaagtattca |
23634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 233
Target Start/End: Complemental strand, 37438635 - 37438444
Alignment:
| Q |
47 |
tgatttaattaactacaaagctttcctggaacaagaagagaaaaatattcgccattgttaccaaaagaagtttcctgatatcagccatgaacaatttgtt |
146 |
Q |
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||||||||| |||| |||| | ||| | |||||||||||| ||||||| |||| |||||||||||||| || | |||||||| || |||||||| | |
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| T |
37438635 |
tgatttaatgaactgcaaaaccttcgttgaacaagaagagcaaaatatacgccgatgttaccaaaagaaattctcaaatatcagcaataaacaatttatg |
37438536 |
T |
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| Q |
147 |
gacat----gatattgttggatgttgtgttcatcatggagctgttctt-aagagaagctaaaaaatgggaacacaaagatgattatatagta |
233 |
Q |
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| T |
37438535 |
tatatatatgatactgttggatgttgtgttcatcatgatgttgttttttaagagaagctaataaataggaacaaaaagatgattatttagta |
37438444 |
T |
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