View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10188_low_19 (Length: 259)
Name: NF10188_low_19
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 43349211 - 43348970
Alignment:
| Q |
1 |
atattgaacttgcatgaatcaaagaaagtttctctataattttaatttacttttacatataagctcctcatagaataaaaacaattctatactactaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43349211 |
atattgaacttgcatgaatcaaagaaagtttctctataattttaatttacttttacatataagctcctcatagaataaaaacaattctatactactaatt |
43349112 |
T |
|
| Q |
101 |
atatataattaacaagacaattttcttcttctaaaataaaagaaagcatgaataagcacgcttacccaaaagccaatagcatgatcaccaacataatgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43349111 |
atatataattaacaagacaattttcttcttataaaataaaagaaaacatgaataagcactcttacccaaaagccaatagcatgatcaccaacataatgat |
43349012 |
T |
|
| Q |
201 |
agaattagagtattcttcttcttggtttaccatgagaattgt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43349011 |
agaattagagtattcttcttcttggtttaccatgagaattgt |
43348970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University