View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10188_low_2 (Length: 485)

Name: NF10188_low_2
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10188_low_2
NF10188_low_2
[»] chr1 (19 HSPs)
chr1 (369-485)||(39199645-39199760)
chr1 (199-301)||(16648690-16648794)
chr1 (204-311)||(10136262-10136371)
chr1 (200-301)||(19798055-19798158)
chr1 (217-311)||(39199817-39199917)
chr1 (203-311)||(12260912-12261021)
chr1 (204-311)||(25844693-25844802)
chr1 (197-311)||(39586131-39586245)
chr1 (213-311)||(38622135-38622235)
chr1 (204-309)||(51040573-51040680)
chr1 (204-273)||(10141030-10141099)
chr1 (199-311)||(11807151-11807265)
chr1 (197-311)||(16036535-16036652)
chr1 (204-299)||(26926780-26926879)
chr1 (199-278)||(47450278-47450357)
chr1 (199-245)||(33300379-33300425)
chr1 (206-296)||(23191902-23191994)
chr1 (203-247)||(46697271-46697315)
chr1 (199-227)||(8138565-8138593)
[»] chr6 (23 HSPs)
chr6 (398-485)||(16864623-16864710)
chr6 (199-311)||(20747347-20747461)
chr6 (200-311)||(16835212-16835325)
chr6 (199-311)||(2699165-2699279)
chr6 (199-311)||(19994434-19994548)
chr6 (199-311)||(11569742-11569855)
chr6 (204-311)||(17963608-17963717)
chr6 (199-311)||(25313523-25313639)
chr6 (199-311)||(26201017-26201133)
chr6 (199-301)||(11533761-11533865)
chr6 (199-301)||(11559271-11559375)
chr6 (204-311)||(6406910-6407019)
chr6 (199-301)||(5856917-5857021)
chr6 (199-311)||(12405410-12405524)
chr6 (199-311)||(11612953-11613068)
chr6 (200-276)||(14509910-14509986)
chr6 (198-311)||(33686694-33686808)
chr6 (200-311)||(17914525-17914638)
chr6 (205-297)||(22610449-22610543)
chr6 (215-311)||(17600328-17600423)
chr6 (209-311)||(12689911-12690014)
chr6 (220-311)||(12797832-12797929)
chr6 (232-305)||(22694439-22694514)
[»] chr2 (27 HSPs)
chr2 (199-311)||(25496434-25496548)
chr2 (199-304)||(12797861-12797968)
chr2 (204-300)||(19891568-19891664)
chr2 (199-311)||(24537073-24537187)
chr2 (199-311)||(25477339-25477453)
chr2 (199-301)||(25637825-25637928)
chr2 (199-299)||(29678610-29678712)
chr2 (204-311)||(17968014-17968123)
chr2 (204-283)||(34495186-34495265)
chr2 (204-311)||(9179778-9179886)
chr2 (204-311)||(9184469-9184577)
chr2 (204-311)||(30651851-30651960)
chr2 (200-311)||(40846632-40846745)
chr2 (220-311)||(19896903-19896994)
chr2 (197-311)||(42925726-42925841)
chr2 (209-297)||(12361191-12361279)
chr2 (223-311)||(18345372-18345462)
chr2 (204-300)||(17974411-17974510)
chr2 (198-311)||(32080307-32080423)
chr2 (203-301)||(15446342-15446443)
chr2 (204-256)||(1934098-1934150)
chr2 (197-311)||(31328991-31329108)
chr2 (197-311)||(31335712-31335829)
chr2 (203-301)||(28604022-28604122)
chr2 (199-235)||(12002033-12002069)
chr2 (206-305)||(44630504-44630605)
chr2 (279-311)||(1934059-1934091)
[»] chr8 (21 HSPs)
chr8 (198-311)||(28559166-28559281)
chr8 (199-311)||(44924971-44925085)
chr8 (199-311)||(15950622-15950739)
chr8 (199-300)||(38181343-38181446)
chr8 (199-311)||(2966517-2966631)
chr8 (199-311)||(26780036-26780150)
chr8 (198-309)||(28564347-28564460)
chr8 (199-301)||(18875445-18875549)
chr8 (204-311)||(40124944-40125053)
chr8 (200-301)||(1808384-1808487)
chr8 (197-301)||(23547671-23547770)
chr8 (204-301)||(33417467-33417566)
chr8 (220-302)||(33100541-33100624)
chr8 (199-311)||(1909997-1910112)
chr8 (199-306)||(24672374-24672483)
chr8 (199-256)||(17027073-17027130)
chr8 (199-256)||(17557565-17557622)
chr8 (259-309)||(5884889-5884939)
chr8 (258-311)||(17021247-17021301)
chr8 (258-311)||(17551684-17551738)
chr8 (197-245)||(22714116-22714164)
[»] chr5 (26 HSPs)
chr5 (199-311)||(10759411-10759525)
chr5 (199-311)||(6154482-6154596)
chr5 (204-311)||(26668215-26668324)
chr5 (204-311)||(26939812-26939921)
chr5 (200-311)||(37247849-37247962)
chr5 (204-311)||(37646105-37646216)
chr5 (199-311)||(12103986-12104100)
chr5 (204-311)||(37536987-37537097)
chr5 (204-311)||(7452691-7452801)
chr5 (204-311)||(29167023-29167132)
chr5 (208-311)||(36430459-36430564)
chr5 (199-298)||(20180216-20180314)
chr5 (221-301)||(40148797-40148879)
chr5 (208-311)||(36424579-36424684)
chr5 (198-300)||(17162787-17162892)
chr5 (203-300)||(17159312-17159412)
chr5 (240-309)||(6511655-6511726)
chr5 (200-248)||(6511744-6511792)
chr5 (205-310)||(23689009-23689116)
chr5 (203-293)||(15149601-15149692)
chr5 (204-266)||(39519332-39519394)
chr5 (204-266)||(39523971-39524033)
chr5 (203-300)||(35678959-35679058)
chr5 (203-246)||(22832636-22832679)
chr5 (211-307)||(40567656-40567754)
chr5 (279-311)||(9725824-9725856)
[»] chr4 (34 HSPs)
chr4 (199-311)||(13064860-13064974)
chr4 (199-311)||(16421978-16422092)
chr4 (200-311)||(55252577-55252690)
chr4 (202-311)||(33462407-33462515)
chr4 (199-311)||(12822960-12823074)
chr4 (175-299)||(33468064-33468195)
chr4 (200-311)||(2820725-2820838)
chr4 (204-311)||(8694650-8694759)
chr4 (199-311)||(32081215-32081329)
chr4 (199-311)||(32220614-32220728)
chr4 (204-311)||(31728416-31728524)
chr4 (204-311)||(37258913-37259022)
chr4 (204-311)||(37263613-37263722)
chr4 (199-311)||(19107510-19107624)
chr4 (215-301)||(5925857-5925943)
chr4 (200-311)||(13060399-13060512)
chr4 (215-301)||(27183183-27183269)
chr4 (204-311)||(31274451-31274560)
chr4 (203-311)||(51698863-51698975)
chr4 (206-311)||(19102905-19103012)
chr4 (204-307)||(31766809-31766914)
chr4 (199-271)||(19907180-19907252)
chr4 (203-303)||(29349263-29349366)
chr4 (204-301)||(5270482-5270582)
chr4 (200-297)||(23094042-23094141)
chr4 (197-311)||(48275889-48276003)
chr4 (223-300)||(6943740-6943819)
chr4 (203-311)||(12875340-12875450)
chr4 (215-293)||(40408896-40408975)
chr4 (196-283)||(16948929-16949017)
chr4 (219-294)||(8028215-8028292)
chr4 (198-255)||(28601560-28601617)
chr4 (199-228)||(39216233-39216262)
chr4 (279-311)||(8029385-8029417)
[»] chr3 (22 HSPs)
chr3 (199-311)||(20520893-20521007)
chr3 (199-309)||(55432159-55432269)
chr3 (199-311)||(14437740-14437854)
chr3 (204-311)||(7570265-7570374)
chr3 (204-311)||(18472943-18473052)
chr3 (204-311)||(27709868-27709974)
chr3 (204-309)||(55326714-55326821)
chr3 (204-296)||(39774890-39774984)
chr3 (204-311)||(23660539-23660648)
chr3 (204-311)||(23665171-23665280)
chr3 (204-311)||(757414-757522)
chr3 (204-311)||(12964934-12965043)
chr3 (199-309)||(12970860-12970974)
chr3 (204-283)||(18468149-18468228)
chr3 (199-311)||(46964945-46965058)
chr3 (199-301)||(12111650-12111749)
chr3 (195-311)||(7860633-7860754)
chr3 (242-311)||(20175368-20175436)
chr3 (197-306)||(29351156-29351268)
chr3 (206-301)||(3656317-3656414)
chr3 (244-311)||(2206881-2206946)
chr3 (199-230)||(3419925-3419956)
[»] chr7 (20 HSPs)
chr7 (199-311)||(12256954-12257067)
chr7 (199-311)||(42625628-42625747)
chr7 (203-311)||(12181802-12181912)
chr7 (199-282)||(12800322-12800405)
chr7 (199-292)||(16373280-16373373)
chr7 (204-309)||(26342144-26342251)
chr7 (199-299)||(21672137-21672239)
chr7 (204-311)||(4931160-4931269)
chr7 (199-297)||(6590079-6590177)
chr7 (199-303)||(27246606-27246710)
chr7 (199-301)||(3046506-3046610)
chr7 (200-311)||(3880901-3881017)
chr7 (197-295)||(9814941-9815042)
chr7 (197-295)||(10716866-10716967)
chr7 (199-271)||(8269232-8269304)
chr7 (203-311)||(13313364-13313474)
chr7 (197-311)||(10392139-10392256)
chr7 (197-309)||(26286210-26286325)
chr7 (220-301)||(23247618-23247701)
chr7 (201-254)||(23152177-23152230)
[»] scaffold0690 (1 HSPs)
scaffold0690 (199-311)||(6164-6278)
[»] scaffold0240 (1 HSPs)
scaffold0240 (199-297)||(4903-5002)
[»] scaffold0054 (2 HSPs)
scaffold0054 (199-299)||(30109-30211)
scaffold0054 (239-311)||(26413-26487)
[»] scaffold0002 (2 HSPs)
scaffold0002 (204-311)||(5001-5110)
scaffold0002 (200-311)||(442990-443102)
[»] scaffold0352 (1 HSPs)
scaffold0352 (204-311)||(8045-8155)
[»] scaffold0057 (1 HSPs)
scaffold0057 (200-311)||(36055-36167)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 369 - 485
Target Start/End: Complemental strand, 39199760 - 39199645
Alignment:
Q  369 cttcccacatcacaccaatgttccaacattatcaagaatcgccatcaagttttaatgatgtctttaatctttgaattgaccgctttagatgatatgaagt 468  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  39199760 cttcccacatcacaccaatgttccaacattatcaagaatcaccatcacgttttaatgatgtctttaatctttgta-tgaccgctttagatgatatgaagt 39199662  T
Q  469 gtttcttctagcacttt 485  Q
    |||||||||||||||||    
T  39199661 gtttcttctagcacttt 39199645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 16648794 - 16648690
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||    
T  16648794 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtg 16648695  T
Q  297 ggacc 301  Q
    |||||    
T  16648694 ggacc 16648690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 10136262 - 10136371
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||||||||    
T  10136262 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacc 10136361  T
Q  302 tccacactct 311  Q
     |||||||||    
T  10136362 cccacactct 10136371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 19798158 - 19798055
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatat--gtgttctattttatgtgg 297  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| ||||||  | ||||||||||||||||    
T  19798158 aataaaaataattattactattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatatgcgagttctattttatgtgg 19798059  T
Q  298 gacc 301  Q
    ||||    
T  19798058 gacc 19798055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 39199917 - 39199817
Alignment:
Q  217 ctattatttttatcgttattaagtatttaaaagtaaatactgcaatttaa----acactattaa--tatgtgttctattttatgtgggacctccacactc 310  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    ||||||||||  | ||||||||||||||||||||||||||||||||    
T  39199917 ctattatttttatcattattaagtatttaaaagtaaatactgcaatttaaacacacactattaatgtgtgtgttctattttatgtgggacctccacactc 39199818  T
Q  311 t 311  Q
    |    
T  39199817 t 39199817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 311
Target Start/End: Original strand, 12260912 - 12261021
Alignment:
Q  203 aaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaat--atgtgttctattttatgtgggac 300  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| |||||||  | |||||||||||| ||||   ||||||||||||||||||||||    
T  12260912 aaaaataataattactattatttttatcattatcaagtatttaaaattaaataccactatttaaacactactaatgagtgtgttctattttatgtgggac 12261011  T
Q  301 ctccacactct 311  Q
    | |||||||||    
T  12261012 c-ccacactct 12261021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 25844693 - 25844802
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| ||||||    
T  25844693 aaaataataattactattatttttatcactatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacc 25844792  T
Q  302 tccacactct 311  Q
     |||||||||    
T  25844793 cccacactct 25844802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 39586245 - 39586131
Alignment:
Q  197 atgaataaa-aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgt 295  Q
    ||||||||| ||||||||||| ||||||||||||| |||| | |||||||||| ||||||   | ||||||||| ||||||| | |||||||||||||||    
T  39586245 atgaataaagaataataattattattatttttatcattatcaggtatttaaaattaaatatcactatttaaaca-tattaatgtttgttctattttatgt 39586147  T
Q  296 gggacctccacactct 311  Q
    ||||||||||||||||    
T  39586146 gggacctccacactct 39586131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 38622135 - 38622235
Alignment:
Q  213 attactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggacctccacactc 310  Q
    |||||||||||||||||| |||| ||||||| ||||  |||||||||| ||||||||||| ||||||||  |||||||||||||||||||  ||||||||    
T  38622135 attactattatttttatcattatcaagtattcaaaatcaaatactgcattttaaacactactaatatgtgagttctattttatgtgggactcccacactc 38622234  T
Q  311 t 311  Q
    |    
T  38622235 t 38622235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 309
Target Start/End: Complemental strand, 51040680 - 51040573
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| ||||||   |||||||||||||| |||  | |||||||||||| |||||||||     
T  51040680 aaaataataattactattatttttatcattatcaagtatttaaaattaaataacacaatttaaacactactaatgtgtgtgttctatttcatgtgggact 51040581  T
Q  302 tccacact 309  Q
     |||||||    
T  51040580 cccacact 51040573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 10141030 - 10141099
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactat 273  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||||    
T  10141030 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactat 10141099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 11807151 - 11807265
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||| |||| |||||||| |||| |||||||||||  |||||||  |||||||||||||  |||  | ||||||||||||||||||    
T  11807151 gaataaaaataataattaatattgtttttatcattatcaagtatttaaatttaaataccacaatttaaacactgctaatgtgtgtgttctattttatgtg 11807250  T
Q  297 ggacctccacactct 311  Q
    | | |||| ||||||    
T  11807251 gaatctccgcactct 11807265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 311
Target Start/End: Original strand, 16036535 - 16036652
Alignment:
Q  197 atgaataaa-aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttat 293  Q
    ||||||||| ||||||||| | ||||||||| ||| |||| | |||||||||  |||||||  | |||||||||||| |||| ||||  |||||||||||    
T  16036535 atgaataaagaataataataattattattttcatcattatcaggtatttaaatttaaataccactatttaaacactactaatgtgtgtgttctattttat 16036634  T
Q  294 gtgggacctccacactct 311  Q
    ||||||||||||||||||    
T  16036635 gtgggacctccacactct 16036652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 299
Target Start/End: Complemental strand, 26926879 - 26926780
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtattt-aaaagtaaatactgcaattt-aaacactattaa--tatgtgttctattttatgtggga 299  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||| |||||||  |||||| |||||||| |||  | |||||||||||||||||||||    
T  26926879 aaaataataattactattatttttatcattatcaagtatttaaaaattaaataccacaatttaaaacactactaatgtgtgtgttctattttatgtggga 26926780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 47450357 - 47450278
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata 278  Q
    |||||||||||||||| | ||||||||||||| |||| |||||||||||| ||||||  ||| ||||||||||| |||||    
T  47450357 gaataaaaataataataattattatttttatcattatcaagtatttaaaattaaataacgcagtttaaacactactaata 47450278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 33300425 - 33300379
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtattta 245  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||    
T  33300425 gaataaaaataataattactattatttttatcattatcaagtattta 33300379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 296
Target Start/End: Complemental strand, 23191994 - 23191902
Alignment:
Q  206 aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    ||||||||| | ||||||||||||| |||| | |||||||||| |||||||  | | |||||||||| |||  | ||||||||||||||||||    
T  23191994 aataataataattattatttttatcattatcaggtatttaaaattaaataccactacttaaacactactaatgtgtgtgttctattttatgtg 23191902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 46697271 - 46697315
Alignment:
Q  203 aaaaataataattactattatttttatcgttattaagtatttaaa 247  Q
    |||||||||||||||||||||||||||| || | |||||||||||    
T  46697271 aaaaataataattactattatttttatcattttcaagtatttaaa 46697315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 8138565 - 8138593
Alignment:
Q  199 gaataaaaataataattactattattttt 227  Q
    |||||||||||||||||||||||||||||    
T  8138565 gaataaaaataataattactattattttt 8138593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 398 - 485
Target Start/End: Original strand, 16864623 - 16864710
Alignment:
Q  398 tatcaagaatcgccatcaagttttaatgatgtctttaatctttgaattgaccgctttagatgatatgaagtgtttcttctagcacttt 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16864623 tatcaagaatcgccatcaagttttaatgatgtctttaatctttgaattgaccactttagatgatatgaagtgtttcttctagcacttt 16864710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 20747461 - 20747347
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtg 296  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||| |||  ||||||||||||||     
T  20747461 gaataaaaataataattactattgtttttatcgttatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtaagttctattttatgta 20747362  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  20747361 ggacccccacactct 20747347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 16835325 - 16835212
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgg 297  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||||    
T  16835325 aataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgg 16835226  T
Q  298 gacctccacactct 311  Q
    |||| |||||||||    
T  16835225 gacccccacactct 16835212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 2699279 - 2699165
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||  ||||  ||||||||||| ||||||| ||||||||||||||| |||| ||||  ||||||||||||||    
T  2699279 gaataaaaataataattactattatttttattattatctagtatttaaaattaaataccgcaatttaaacactactaatgtgtgaattctattttatgtg 2699180  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  2699179 ggacccccacactct 2699165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 19994548 - 19994434
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| | || |||||||||||| ||||||| ||||||||||||||| |||  | |||||||||||||| |||    
T  19994548 gaataaaaataataattactattatttttatcataatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttacgtg 19994449  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  19994448 ggacccccacactct 19994434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 11569855 - 11569742
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||   ||  | ||||||||||||||||||    
T  11569855 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacacttccaatgtgtgtgttctattttatgtg 11569756  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  11569755 ggacc-ccacactct 11569742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 17963717 - 17963608
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||||||||    
T  17963717 aaaataacaattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacc 17963618  T
Q  302 tccacactct 311  Q
     |||||||||    
T  17963617 cccacactct 17963608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 25313639 - 25313523
Alignment:
Q  199 gaataaaaataataattactattattttt--atcgttattaagtatttaaaagtaaatactgcaatttaaacactatta--atatgtgttctattttatg 294  Q
    |||||||||||||||||||||||||||||  ||| |||| |||||||||||| ||||||| ||||||||||||||| ||  |||||||||||||||||||    
T  25313639 gaataaaaataataattactattatttttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatatatgtgttctattttatg 25313540  T
Q  295 tgggacctccacactct 311  Q
    || ||||  ||||||||    
T  25313539 tgtgacccgcacactct 25313523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 26201133 - 26201017
Alignment:
Q  199 gaataaaaataataattactattattttt--atcgttattaagtatttaaaagtaaatactgcaatttaaacactatta--atatgtgttctattttatg 294  Q
    |||||||||||||||||||||||||||||  ||| |||| |||||||||||| ||||||| ||||||||||||||| ||  |||||||||||||||||||    
T  26201133 gaataaaaataataattactattatttttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatatatgtgttctattttatg 26201034  T
Q  295 tgggacctccacactct 311  Q
    || ||||  ||||||||    
T  26201033 tgtgacccgcacactct 26201017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 11533865 - 11533761
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    ||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||| |||||||||||||||  ||  | ||||||||||||||||||    
T  11533865 gaataaaaataataattacaattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactaccaatgtgtgtgttctattttatgtg 11533766  T
Q  297 ggacc 301  Q
    |||||    
T  11533765 ggacc 11533761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 11559375 - 11559271
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    ||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||| |||||||||||||||  ||  | ||||||||||||||||||    
T  11559375 gaataaaaataataattacaattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactaccaatgtgtgtgttctattttatgtg 11559276  T
Q  297 ggacc 301  Q
    |||||    
T  11559275 ggacc 11559271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 6407019 - 6406910
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||  |||||    
T  6407019 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcaggacc 6406920  T
Q  302 tccacactct 311  Q
     |||||||||    
T  6406919 cccacactct 6406910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 5856917 - 5857021
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatg--tgttctattttatgtg 296  Q
    |||||||||||| ||||||||||||||||||| |||| || ||||||||| ||||||| ||||||||||||||| |||| ||  ||||||| ||||||||    
T  5856917 gaataaaaataacaattactattatttttatcattatcaattatttaaaattaaataccgcaatttaaacactactaatgtgtatgttctagtttatgtg 5857016  T
Q  297 ggacc 301  Q
    |||||    
T  5857017 ggacc 5857021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 12405524 - 12405410
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||| ||||| |||  | ||||||||||||||| ||    
T  12405524 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaagtacctcaatttaatcactactaatgtgtgtgttctattttatttg 12405425  T
Q  297 ggacctccacactct 311  Q
     || |||||||||||    
T  12405424 tgatctccacactct 12405410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 11613068 - 11612953
Alignment:
Q  199 gaataaaaataat-aattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgt 295  Q
    |||||||| |||| ||| ||||||||||||||| |||| |||||||||||| ||||||| | ||||||||||||| |||  | |||||| ||||||||||    
T  11613068 gaataaaattaattaatcactattatttttatcattatcaagtatttaaaattaaataccgaaatttaaacactactaatgtgtgtgttttattttatgt 11612969  T
Q  296 gggacctccacactct 311  Q
    |||||||| |||||||    
T  11612968 gggacctcaacactct 11612953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 14509910 - 14509986
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa 276  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||  ||||||||||||||||||    
T  14509910 aataaaaaaaataattactattatttttattattattaagtatttaaaattaaataccacaatttaaacactattaa 14509986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 33686808 - 33686694
Alignment:
Q  198 tgaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgt 295  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||||| |||||||  || ||||||||||| |||| |||  ||| ||||||||||    
T  33686808 tgaataaaaataataattactattatttttatcattaccaagtatttaaaactaaataccacagtttaaacactactaatttgtaagttttattttatgt 33686709  T
Q  296 gggacctccacactct 311  Q
    || ||| |||||||||    
T  33686708 ggaacc-ccacactct 33686694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 17914525 - 17914638
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgg 297  Q
    |||||||||||||||| |||||||||||||| | || | |||||||||| ||||||| | |||| ||||||||||||  | ||||||| ||||||||| |    
T  17914525 aataaaaataataattgctattatttttatcatcatcaggtatttaaaattaaataccgtaattaaaacactattaatgtgtgtgttccattttatgtag 17914624  T
Q  298 gacctccacactct 311  Q
    |||||| |||||||    
T  17914625 gacctcaacactct 17914638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 22610449 - 22610543
Alignment:
Q  205 aaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgg 297  Q
    ||||||||||||| |||||||||||| |||| |||||||||||| |||||||   ||||||||||||| |||  | |||||| ||||||||||||    
T  22610449 aaataataattacaattatttttatcattatcaagtatttaaaattaaataccaaaatttaaacactactaatgtgtgtgttttattttatgtgg 22610543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 215 - 311
Target Start/End: Original strand, 17600328 - 17600423
Alignment:
Q  215 tactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 311  Q
    |||| ||||||||||| |||| || ||||||||| |||||||  |||||||||||||| |  | |||||||||||||||||||||||  ||||||||    
T  17600328 tactgttatttttatcattatcaattatttaaaattaaataccacaatttaaacactaat-gtttgtgttctattttatgtgggaccctcacactct 17600423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 311
Target Start/End: Original strand, 12689911 - 12690014
Alignment:
Q  209 aataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccac 306  Q
    |||||||| ||||||||| |||  ||| |  ||||||||| ||||||| || |||||||||||| |||  | ||||||||||||||||||||| ||||||    
T  12689911 aataattattattattttcatcaatatcagttatttaaaattaaataccgctatttaaacactactaatgtgtgtgttctattttatgtggga-ctccac 12690009  T
Q  307 actct 311  Q
    |||||    
T  12690010 actct 12690014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 12797929 - 12797832
Alignment:
Q  220 ttatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg------ttctattttatgtgggacctccacactct 311  Q
    |||||||||||||| | |||||||||||| |||||||  | |||||||||||| || | ||||      |||||||||||||||||||  ||||||||    
T  12797929 ttatttttatcgttgtcaagtatttaaaattaaataccactatttaaacactactagtgtgtgtgtgttttctattttatgtgggacccacacactct 12797832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 22694514 - 22694439
Alignment:
Q  232 ttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctcca 305  Q
    |||| |||| |||| || ||||||| |||||||||||||| |  |  | |||||||||||||||||||||||||||    
T  22694514 ttatcaagtttttataattaaatacggcaatttaaacactctagatgtgtgtgttctattttatgtgggacctcca 22694439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 25496548 - 25496434
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||    
T  25496548 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtg 25496449  T
Q  297 ggacctccacactct 311  Q
    |||||||||||||||    
T  25496448 ggacctccacactct 25496434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 12797861 - 12797968
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||    
T  12797861 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtg 12797960  T
Q  297 ggacctcc 304  Q
    ||||||||    
T  12797961 ggacctcc 12797968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 204 - 300
Target Start/End: Complemental strand, 19891664 - 19891568
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggac 300  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||| ||||||||||||||||||||||    
T  19891664 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactaataatgtgtgttctattttatgtgggac 19891568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 24537187 - 24537073
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| | | ||||||||||| |||  |||||||| |||||||||||    
T  24537187 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccgtagtttaaacactactaatgtatgtgttatattttatgtg 24537088  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  24537087 ggacccccacactct 24537073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 25477453 - 25477339
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | |||||||||||||||||     
T  25477453 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgta 25477354  T
Q  297 ggacctccacactct 311  Q
     |||| |||||||||    
T  25477353 agaccaccacactct 25477339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 25637928 - 25637825
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtattt-aaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgg 297  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| |||| ||||||| ||| ||||||||||| |||| |||||||||||||||||||    
T  25637928 gaataaaaataataattactattatttttatcattatcaagtatttaaaaattaaataccgcagtttaaacactactaatgtgtgttctattttatgtgg 25637829  T
Q  298 gacc 301  Q
    ||||    
T  25637828 gacc 25637825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 29678610 - 29678712
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||    
T  29678610 gaataaaaataataattactattatttttatcattatcaaatatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtg 29678709  T
Q  297 gga 299  Q
    |||    
T  29678710 gga 29678712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 17968123 - 17968014
Alignment:
Q  204 aaaataataattactattatttttatcgttattaa-gtatttaaaagtaaatactgcaatttaaacactattaata--tgtgttctattttatgtgggac 300  Q
    ||||||||||||||||||||||||||| |||| || |||||||||| |||||||  |||||||||||||| |||||  ||||||||||||||||||||||    
T  17968123 aaaataataattactattatttttatcattatcaaagtatttaaaattaaataccacaatttaaacactactaatatgtgtgttctattttatgtgggac 17968024  T
Q  301 ctccacactct 311  Q
    | |||||||||    
T  17968023 c-ccacactct 17968014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 34495265 - 34495186
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt 283  Q
    ||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  34495265 aaaataataatgactattatttttatcattatcaagtatttaaaattaaatactgcaatttaaacactaataatatgtgt 34495186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 9179886 - 9179778
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||| |||||||  |||||||||||||| |||  | |||||||||||||||||||||||    
T  9179886 aaaataataattactattatttttatcattatcaagtattt-aaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacc 9179788  T
Q  302 tccacactct 311  Q
     |||||||||    
T  9179787 cccacactct 9179778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 9184577 - 9184469
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||| |||||||  |||||||||||||| |||  | |||||||||||||||||||||||    
T  9184577 aaaataataattactattatttttatcattatcaagtattt-aaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacc 9184479  T
Q  302 tccacactct 311  Q
     |||||||||    
T  9184478 cccacactct 9184469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 30651851 - 30651960
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| ||||||    
T  30651851 aaaataataattactattatttttatcactatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacc 30651950  T
Q  302 tccacactct 311  Q
     |||||||||    
T  30651951 cccacactct 30651960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 40846745 - 40846632
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgg 297  Q
    ||||||||||| ||||||||||||||||||  |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||||    
T  40846745 aataaaaataaaaattactattatttttattattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgg 40846646  T
Q  298 gacctccacactct 311  Q
    || | |||||||||    
T  40846645 gatccccacactct 40846632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 19896903 - 19896994
Alignment:
Q  220 ttatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 311  Q
    ||||||||||| |||| || ||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||    
T  19896903 ttatttttatcattatcaaatatttaaaattaaataccgcaatttaaacactactaatgtgtgttctattttatgtgggacccccacgctct 19896994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 42925841 - 42925726
Alignment:
Q  197 atgaataaa-aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgt 295  Q
    ||||||||| ||||||||||| ||||||||| ||| |||| | |||||||||| ||||||   | |||||||||||| |||| |||||||||||||| ||    
T  42925841 atgaataaataataataattattattattttcatcattatcaggtatttaaaattaaatatcactatttaaacactactaatgtgtgttctattttacgt 42925742  T
Q  296 gggacctccacactct 311  Q
    ||||||||||||||||    
T  42925741 gggacctccacactct 42925726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 12361191 - 12361279
Alignment:
Q  209 aataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgg 297  Q
    |||||||||||||||||||||| |||| || ||||||||| |||||||  |||||||||||||| |||| ||| |||||||||||||||    
T  12361191 aataattactattatttttatcattatcaattatttaaaattaaataccacaatttaaacactactaatgtgtcttctattttatgtgg 12361279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 18345372 - 18345462
Alignment:
Q  223 tttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccacactct 311  Q
    |||||||| ||||||||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||| |||||||||    
T  18345372 tttttatcattattaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacccccacactct 18345462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 204 - 300
Target Start/End: Complemental strand, 17974510 - 17974411
Alignment:
Q  204 aaaataataattactattatttttatcgttattaa-gtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 300  Q
    |||||||||||||| |||||||||||| |||| || |||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||    
T  17974510 aaaataataattacaattatttttatcattatcaaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggac 17974411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 198 - 311
Target Start/End: Original strand, 32080307 - 32080423
Alignment:
Q  198 tgaataaaaataataattactattatttttatcgttattaagtatttaaaagt-aaatactgcaatttaaacactattaatatgtg--ttctattttatg 294  Q
    |||||||||| |||||||||||||||||||||| |||| | ||| |||||| | |||||    ||| |||| ||||||||||||||  ||||||||||||    
T  32080307 tgaataaaaaaaataattactattatttttatcattatcaggtacttaaaaattaaatatcataatataaatactattaatatgtgtgttctattttatg 32080406  T
Q  295 tgggacctccacactct 311  Q
    ||||||||||| |||||    
T  32080407 tgggacctccaaactct 32080423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 15446443 - 15446342
Alignment:
Q  203 aaaaataataattactattatttttatcgttattaagtatttaaaagt-aaatactgcaatttaaacactattaat--atgtgttctattttatgtggga 299  Q
    |||||||||||||| || || ||||| | |||| |||||||||||| | ||||||  |||||||||||||| ||||  ||||||||||||||||||||||    
T  15446443 aaaaataataattattactacttttaccattatcaagtatttaaaaattaaataccacaatttaaacactactaatgtatgtgttctattttatgtggga 15446344  T
Q  300 cc 301  Q
    ||    
T  15446343 cc 15446342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 1934150 - 1934098
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatac 256  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||    
T  1934150 aaaataataattactattatttttatcactatcaagtatttaaaattaaatac 1934098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 311
Target Start/End: Original strand, 31328991 - 31329108
Alignment:
Q  197 atgaataaa-aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttat 293  Q
    ||||||||| ||||||||| |  || ||||| ||| |||| | |||||||||| |||||||  | |||||||||||| |||  |||  |||||||||||     
T  31328991 atgaataaagaataataataataataattttcatcattatcatgtatttaaaattaaataccactatttaaacactactaacgtgtttgttctattttac 31329090  T
Q  294 gtgggacctccacactct 311  Q
    ||||||||||||||||||    
T  31329091 gtgggacctccacactct 31329108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 311
Target Start/End: Original strand, 31335712 - 31335829
Alignment:
Q  197 atgaataaa-aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttat 293  Q
    ||||||||| ||||||||| |  || ||||| ||| |||| | |||||||||| |||||||  | |||||||||||| |||  |||  |||||||||||     
T  31335712 atgaataaagaataataataataataattttcatcattatcatgtatttaaaattaaataccactatttaaacactactaacgtgtttgttctattttac 31335811  T
Q  294 gtgggacctccacactct 311  Q
    ||||||||||||||||||    
T  31335812 gtgggacctccacactct 31335829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 301
Target Start/End: Original strand, 28604022 - 28604122
Alignment:
Q  203 aaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggac 300  Q
    ||||||||| |||| ||||||||| ||| |||| | |||||||||| ||||||   | |||||||||||  |||| |||||  |||||||||||||||||    
T  28604022 aaaaataattattattattattttcatcattatcatgtatttaaaattaaatatcactatttaaacactgataatctgtgtaatctattttatgtgggac 28604121  T
Q  301 c 301  Q
    |    
T  28604122 c 28604122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 12002069 - 12002033
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttat 235  Q
    |||||||||||||||||||||||||||||||| ||||    
T  12002069 gaataaaaataataattactattatttttatcattat 12002033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 44630605 - 44630504
Alignment:
Q  206 aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtgggacctc 303  Q
    ||||||||| |  |||||| ||||| |||| | |||||||||| |||| ||  | ||||||||| || |||| |||||  ||||||||||||||||||||    
T  44630605 aataataataataattattattatcattatcaggtatttaaaattaaacaccactatttaaacaatactaatgtgtgtgttctattttatgtgggacctc 44630506  T
Q  304 ca 305  Q
    ||    
T  44630505 ca 44630504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 1934091 - 1934059
Alignment:
Q  279 tgtgttctattttatgtgggacctccacactct 311  Q
    |||||||||||||||||||||||||| ||||||    
T  1934091 tgtgttctattttatgtgggacctccccactct 1934059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 28559281 - 28559166
Alignment:
Q  198 tgaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgt 295  Q
    ||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||| ||||||||||||||| |||  | |||||||||||||||||    
T  28559281 tgaataaaaataataattactattatttttatcattatcaaatatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgt 28559182  T
Q  296 gggacctccacactct 311  Q
    ||||||||||||||||    
T  28559181 gggacctccacactct 28559166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 44925085 - 44924971
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtg 296  Q
    |||||||||||||||||||| ||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||| ||||  ||||||||||||||    
T  44925085 gaataaaaataataattactgttatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgttttctattttatgtg 44924986  T
Q  297 ggacctccacactct 311  Q
    ||||||||| |||||    
T  44924985 ggacctccaaactct 44924971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 15950739 - 15950622
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttatta---agtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttat 293  Q
    |||||||||||||||||||||||||||||||| | ||||   ||||||||||| ||||||| |||||||||||||||||||  | |||||||||||||||    
T  15950739 gaataaaaataataattactattatttttatcatcattatcaagtatttaaaattaaataccgcaatttaaacactattaatgtgtgtgttctattttat 15950640  T
Q  294 gtgggacctccacactct 311  Q
    |||| |||||||||||||    
T  15950639 gtggcacctccacactct 15950622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 38181446 - 38181343
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||    
T  38181446 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtg 38181347  T
Q  297 ggac 300  Q
    ||||    
T  38181346 ggac 38181343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 2966517 - 2966631
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||| ||    
T  2966517 gaataaaaataataattactataatttttatcattattaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatatg 2966616  T
Q  297 ggacctccacactct 311  Q
    |||||  ||||||||    
T  2966617 ggaccctcacactct 2966631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 26780036 - 26780150
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||    
T  26780036 gaataaaaataataattactattgtttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtg 26780135  T
Q  297 ggacctccacactct 311  Q
    ||||  |||||||||    
T  26780136 ggacacccacactct 26780150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 309
Target Start/End: Complemental strand, 28564460 - 28564347
Alignment:
Q  198 tgaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgt 295  Q
    ||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||| | ||||||||||||| |||  | |||||||||||||||||    
T  28564460 tgaataaaaataataattactattatttttatcattatcaaatatttaaaattaaataccgtaatttaaacactactaatgtgtgtgttctattttatgt 28564361  T
Q  296 gggacctccacact 309  Q
    || |||||||||||    
T  28564360 ggaacctccacact 28564347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 18875549 - 18875445
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata--tgtgttctattttatgtg 296  Q
    ||||||||| ||||||||||||||||| |||| |||| |||||||||||| ||||||| ||||||||||||||| |||||  ||||||||||| ||||||    
T  18875549 gaataaaaacaataattactattatttgtatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatatgtgtgttctattgtatgtg 18875450  T
Q  297 ggacc 301  Q
    |||||    
T  18875449 ggacc 18875445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 40125053 - 40124944
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| ||||||    
T  40125053 aaaataataattactattatttttatcactatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacc 40124954  T
Q  302 tccacactct 311  Q
     |||||||||    
T  40124953 cccacactct 40124944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 1808384 - 1808487
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgg 297  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||| ||||||||||||||  |||  | ||||||||||||||| |||    
T  1808384 aataaaaataataattactattatttttatcattatcaaatatttaaaattaaataccgcaatttaaacacttctaatgtgtgtgttctattttatatgg 1808483  T
Q  298 gacc 301  Q
    ||||    
T  1808484 gacc 1808487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 23547770 - 23547671
Alignment:
Q  197 atgaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtg 296  Q
    ||||||||||| |||||||||||||||||||||| |||| |||||||||||| ||||||| |||||||||     |||||||||||||||| ||||||||    
T  23547770 atgaataaaaacaataattactattatttttatcattatcaagtatttaaaattaaataccgcaatttaa-----attaatatgtgttctaatttatgtg 23547676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 33417467 - 33417566
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||| ||||    
T  33417467 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgagacc 33417566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 220 - 302
Target Start/End: Original strand, 33100541 - 33100624
Alignment:
Q  220 ttatttttatcgttattaagtatttaaaagt-aaatactgcaatttaaacactattaatatgtgttctattttatgtgggacct 302  Q
    ||||| ||||| |||| |||||||||||| | ||||||||||||||||| | ||||||| ||| ||||||||||||||||||||    
T  33100541 ttattgttatcattatcaagtatttaaaaattaaatactgcaatttaaagattattaatgtgtattctattttatgtgggacct 33100624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 1910112 - 1909997
Alignment:
Q  199 gaataaaaataataattactattattttt-atcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgt 295  Q
    |||||||||||  |||||||||||||||| ||| |||| |||||||||||| |||||||  |  ||||||||||| |||| |||  | ||||||| ||||    
T  1910112 gaataaaaatagcaattactattattttttatcattatcaagtatttaaaattaaataccactgtttaaacactactaatgtgtgagctctatttcatgt 1910013  T
Q  296 gggacctccacactct 311  Q
    ||||| ||||||||||    
T  1910012 gggacatccacactct 1909997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 24672483 - 24672374
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatat--gtgttctattttatgtg 296  Q
    ||||||||||||| || | |||||||| |||| |||||||||||||| || ||||||   |||||||||||||||| || |  ||| |||||||||| ||    
T  24672483 gaataaaaataatcataattattatttctatcattattaagtatttacaattaaatatcacaatttaaacactattgatctgcgtgctctattttatttg 24672384  T
Q  297 ggacctccac 306  Q
    ||||| ||||    
T  24672383 ggacccccac 24672374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 17027073 - 17027130
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatac 256  Q
    |||||||||||||||||| ||||||||||||  |||| |||||||||||| |||||||    
T  17027073 gaataaaaataataattagtattatttttatgattatcaagtatttaaaattaaatac 17027130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 17557565 - 17557622
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatac 256  Q
    |||||||||||||||||| ||||||||||||  |||| |||||||||||| |||||||    
T  17557565 gaataaaaataataattagtattatttttatgattatcaagtatttaaaattaaatac 17557622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 5884889 - 5884939
Alignment:
Q  259 caatttaaacactattaatatgtgttctattttatgtgggacctccacact 309  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||| |||||    
T  5884889 caatttaaacactattaatgtgtgttctatttcatgtggaacctctacact 5884939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 17021247 - 17021301
Alignment:
Q  258 gcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 311  Q
    ||||||||||||||| |||| ||||  ||||||||||||||||||| |||||||||    
T  17021247 gcaatttaaacactactaatgtgtgtgttctattttatgtgggacc-ccacactct 17021301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 17551684 - 17551738
Alignment:
Q  258 gcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 311  Q
    ||||||||||||||| |||| ||||  ||||||||||||||||||| |||||||||    
T  17551684 gcaatttaaacactactaatgtgtgtgttctattttatgtgggacc-ccacactct 17551738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 22714164 - 22714116
Alignment:
Q  197 atgaataaaaataataattactattatttttatcgttattaagtattta 245  Q
    |||||||||||||||||||||||||| || |||| ||||  ||||||||    
T  22714164 atgaataaaaataataattactattacttgtatcattatctagtattta 22714116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 10759525 - 10759411
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatg--tgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |||| ||  ||||||||||||||||    
T  10759525 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaatactgcaatttaaacactactaatgtgtctgttctattttatgtg 10759426  T
Q  297 ggacctccacactct 311  Q
    ||||| | |||||||    
T  10759425 ggacccctacactct 10759411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 6154596 - 6154482
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||    
T  6154596 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtg 6154497  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  6154496 ggacccccacactct 6154482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 26668215 - 26668324
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||||||||    
T  26668215 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacc 26668314  T
Q  302 tccacactct 311  Q
     |||||||||    
T  26668315 cccacactct 26668324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 26939812 - 26939921
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||||||||    
T  26939812 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacc 26939911  T
Q  302 tccacactct 311  Q
     |||||||||    
T  26939912 cccacactct 26939921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 37247962 - 37247849
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgg 297  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| ||    
T  37247962 aataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgg 37247863  T
Q  298 gacctccacactct 311  Q
    |||| |||||||||    
T  37247862 gacccccacactct 37247849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 37646216 - 37646105
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata----tgtgttctattttatgtggga 299  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||||    |||||||||||||||||||||    
T  37646216 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactaataatatgtgtgtgttctattttatgtggga 37646117  T
Q  300 cctccacactct 311  Q
    || |||||||||    
T  37646116 cccccacactct 37646105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 12103986 - 12104100
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    ||||||||||||||| |||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||| ||||||||||    
T  12103986 gaataaaaataataactactattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttccattttatgtg 12104085  T
Q  297 ggacctccacactct 311  Q
    ||||| |||| ||||    
T  12104086 ggacccccactctct 12104100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 37537097 - 37536987
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata----tgtgttctattttatgtggga 299  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||||    |||||||||||||||||||||    
T  37537097 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatatgtgtgtgttctattttatgtggga 37536998  T
Q  300 cctccacactct 311  Q
    || |||||||||    
T  37536997 cc-ccacactct 37536987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 7452691 - 7452801
Alignment:
Q  204 aaaataataattactatta-tttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 300  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||||    
T  7452691 aaaataataattactattaatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggac 7452790  T
Q  301 ctccacactct 311  Q
    | |||||||||    
T  7452791 ccccacactct 7452801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 29167132 - 29167023
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||||| |||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||| |||||    
T  29167132 aaaataataattactattgtttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtaggacc 29167033  T
Q  302 tccacactct 311  Q
      ||||||||    
T  29167032 ctcacactct 29167023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 208 - 311
Target Start/End: Original strand, 36430459 - 36430564
Alignment:
Q  208 taataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctcca 305  Q
    ||||||||||||||||||||||| |||  || ||||||||| |||||||   ||||||||||||| |||  | ||||||||||||||||||||||| |||    
T  36430459 taataattactattatttttatcattaccaaatatttaaaattaaataccataatttaaacactactaatgtgtgtgttctattttatgtgggaccccca 36430558  T
Q  306 cactct 311  Q
    ||||||    
T  36430559 cactct 36430564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 199 - 298
Target Start/End: Complemental strand, 20180314 - 20180216
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |   |||||||| ||||||| | ||||||||||||| |||  | ||||||||||||||||||    
T  20180314 gaataaaaataataattactattatttttatcattatca---atttaaaattaaataccgtaatttaaacactactaatgtgtgtgttctattttatgtg 20180218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 40148797 - 40148879
Alignment:
Q  221 tatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatg--tgttctattttatgtgggacc 301  Q
    |||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||| ||  |||||||||||||||||||||    
T  40148797 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtttgttctattttatgtgggacc 40148879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 311
Target Start/End: Original strand, 36424579 - 36424684
Alignment:
Q  208 taataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctcca 305  Q
    ||||||||| ||||||||||||| |||  |||||||||||| |||||||  |||||||| ||||| |||  | |||||||||||||||||| |||| |||    
T  36424579 taataattaatattatttttatcattaccaagtatttaaaattaaataccacaatttaagcactactaatgtgtgtgttctattttatgtgagaccccca 36424678  T
Q  306 cactct 311  Q
    ||||||    
T  36424679 cactct 36424684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 300
Target Start/End: Original strand, 17162787 - 17162892
Alignment:
Q  198 tgaataaaaataataattactattatttttatcgttattaagtattt-aaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatg 294  Q
    |||||||||| ||| |||||||||||||||||| |||| | |||||| |||| |||||||  |||||||||||| | |||  | ||||||||||||||||    
T  17162787 tgaataaaaaaaatcattactattatttttatcattatcaggtatttaaaaattaaatacctcaatttaaacaccactaatgtgtgtgttctattttatg 17162886  T
Q  295 tgggac 300  Q
    ||||||    
T  17162887 tgggac 17162892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 17159312 - 17159412
Alignment:
Q  203 aaaaataataattactattatttttatcgttattaagtattt-aaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtggga 299  Q
    ||||||||| |||||||||||||||||| |||| | |||||| |||| |||||||  ||||| |||||||| |||| ||||  |||||||||||||||||    
T  17159312 aaaaataatcattactattatttttatcattatcaggtatttaaaaattaaatacctcaattaaaacactactaatgtgtgtcttctattttatgtggga 17159411  T
Q  300 c 300  Q
    |    
T  17159412 c 17159412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 240 - 309
Target Start/End: Complemental strand, 6511726 - 6511655
Alignment:
Q  240 tatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggacctccacact 309  Q
    ||||||||| ||||||||||||||||||||||| |||| |||  |||||||||||||||||||  |||||||    
T  6511726 tatttaaaattaaatactgcaatttaaacactactaatgtgtgagttctattttatgtgggactcccacact 6511655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 6511792 - 6511744
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaa 248  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  6511792 aataaaaataataattactattatttttatcattatcaagtatttaaaa 6511744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 23689009 - 23689116
Alignment:
Q  205 aaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacct 302  Q
    |||| ||||||||||||||||||| | |||| | |||||||||| |||||||  |||||| |||||||  ||  | ||||||||||||||||||||| |     
T  23689009 aaattataattactattatttttaccattataaggtatttaaaattaaataccacaattttaacactacgaatgtgtgtgttctattttatgtgggatcc 23689108  T
Q  303 ccacactc 310  Q
    ||||||||    
T  23689109 ccacactc 23689116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 15149601 - 15149692
Alignment:
Q  203 aaaaataataattactattatttttatcgttattaagtatttaaaagt-aaatactgcaatttaaacactattaatatgtgttctattttat 293  Q
    |||||||||||||||||||||||||||| |||| |  ||| ||||| | |||||    |||||||||||||||||| |||||||||||||||    
T  15149601 aaaaataataattactattatttttatcattatcagatatctaaaaattaaatatcttaatttaaacactattaatgtgtgttctattttat 15149692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 39519332 - 39519394
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaa 266  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||  ||||||||    
T  39519332 aaaataataattactattatttttatcactatcaagtatttaaaattaaataccacaatttaa 39519394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 39523971 - 39524033
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaa 266  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||  ||||||||    
T  39523971 aaaataataattactattatttttatcactatcaagtatttaaaattaaataccacaatttaa 39524033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 35679058 - 35678959
Alignment:
Q  203 aaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 300  Q
    |||||||||||| | ||||||||  ||| |||| | ||||||||||  ||||||  | |||||||||||| |||  | ||||||||||||||||||||||    
T  35679058 aaaaataataataattattatttgcatcattatcaggtatttaaaataaaataccactatttaaacactactaatgtgtgtgttctattttatgtgggac 35678959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 22832679 - 22832636
Alignment:
Q  203 aaaaataataattactattatttttatcgttattaagtatttaa 246  Q
    |||||||||||||||||||||||||| | |||| ||||||||||    
T  22832679 aaaaataataattactattatttttaacattatcaagtatttaa 22832636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 40567754 - 40567656
Alignment:
Q  211 taattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctccaca 307  Q
    |||||||||||||||||||| |||| |  ||||||||| |||||||  |||||||| ||||| |||  | |||||| |||||||| ||| ||| |||||    
T  40567754 taattactattatttttatcattataagatatttaaaattaaataccacaatttaatcactactaacgtgtgtgttttattttatatggtacccccaca 40567656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 9725856 - 9725824
Alignment:
Q  279 tgtgttctattttatgtgggacctccacactct 311  Q
    |||||||||||||||||||||| ||||||||||    
T  9725856 tgtgttctattttatgtgggacatccacactct 9725824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 13064974 - 13064860
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||| |  | ||||||||||||||||||    
T  13064974 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactattgatgtgtgtgttctattttatgtg 13064875  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  13064874 ggacccccacactct 13064860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 16421978 - 16422092
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaat--atgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||| ||||||||||||||| ||||   ||||||||||||||||||    
T  16421978 gaataaaaataataattactattatttttatcattatcaagtattgaaaattaaataccgcaatttaaacactactaatgcgtgtgttctattttatgtg 16422077  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  16422078 ggacccccacactct 16422092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 55252577 - 55252690
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgg 297  Q
    |||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | |||||||||||||||||||    
T  55252577 aataaaaataataattgctattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgg 55252676  T
Q  298 gacctccacactct 311  Q
    |||| |||||||||    
T  55252677 gaccaccacactct 55252690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 33462515 - 33462407
Alignment:
Q  202 taaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| |||| |||||||||||||||||| |||| |||||  |||||||| |||||||    
T  33462515 taaaaataataattactattatttttatcattatcaagtatttaaaattaaacactgcaatttaaacactactaatgtgtgtcttattttat-tgggacc 33462417  T
Q  302 tccacactct 311  Q
    ||||||||||    
T  33462416 tccacactct 33462407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 12823074 - 12822960
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||  || ||||||||||| |||| |||  |||||||||||||||    
T  12823074 gaataaaaataataattactattatttttatcattataaagtatttaaaattaaataccacagtttaaacactactaatgtgtgagttctattttatgtg 12822975  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  12822974 ggacccccacactct 12822960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 175 - 299
Target Start/End: Complemental strand, 33468195 - 33468064
Alignment:
Q  175 accataagctaaatttatgggaa-tgaa----taaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaaca 269  Q
    ||||||||||||||||||||||| |||     ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||    
T  33468195 accataagctaaatttatgggaagtgatattctaaaaataataattactattatttttatcattatcaagtatttaaaattaaatactacaatttaaaca 33468096  T
Q  270 ctattaa--tatgtgttctattttatgtggga 299  Q
    ||| |||  | |||||||||||||||||||||    
T  33468095 ctactaatgtgtgtgttctattttatgtggga 33468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 2820725 - 2820838
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgg 297  Q
    ||||||||||||||||||||||||||||||| |||| || || |||||| ||||||| ||||||||||||||| |||  | |||||||||||||||||||    
T  2820725 aataaaaataataattactattatttttatcattatcaaataattaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgg 2820824  T
Q  298 gacctccacactct 311  Q
    |||| |||||||||    
T  2820825 gacccccacactct 2820838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 8694650 - 8694759
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||||||||    
T  8694650 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacc 8694749  T
Q  302 tccacactct 311  Q
     |||||||||    
T  8694750 cccacactct 8694759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 32081329 - 32081215
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||  |||| |||||||||||| ||||||   |||||||||||||| |||| |||  ||||||||||| |||    
T  32081329 gaataaaaataataattactattatttttataattatcaagtatttaaaattaaatatcacaatttaaacactactaatgtgtgagttctattttacgtg 32081230  T
Q  297 ggacctccacactct 311  Q
    |||||||||||||||    
T  32081229 ggacctccacactct 32081215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 32220728 - 32220614
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatg--tgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||  | ||||||||||||| |||| ||  ||||||||||||||||    
T  32220728 gaataaaaataataattactattatttttatcattatcaaatatttaaaattaaatatcggaatttaaacactaataatgtgtatgttctattttatgtg 32220629  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  32220628 ggacccccacactct 32220614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 31728524 - 31728416
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||||||||    
T  31728524 aaaataataattactattatttttatcattatgaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacc 31728425  T
Q  302 tccacactct 311  Q
     |||||||||    
T  31728424 -ccacactct 31728416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 37259022 - 37258913
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| ||||||    
T  37259022 aaaataataattactattatttttatcactatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacc 37258923  T
Q  302 tccacactct 311  Q
     |||||||||    
T  37258922 cccacactct 37258913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 37263722 - 37263613
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| ||||||    
T  37263722 aaaataataattactattatttttatcactatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacc 37263623  T
Q  302 tccacactct 311  Q
     |||||||||    
T  37263622 cccacactct 37263613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 19107510 - 19107624
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||| ||||||||||| ||||||||| ||| |||| | |||||||||| |||||||  | |||||||||||| |||  | ||||||||||||||||||    
T  19107510 gaataagaataataattattattattttcatcattatcaggtatttaaaattaaataccactatttaaacactactaatgtgtgtgttctattttatgtg 19107609  T
Q  297 ggacctccacactct 311  Q
    |||||||||||||||    
T  19107610 ggacctccacactct 19107624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 5925943 - 5925857
Alignment:
Q  215 tactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||| |||| |||||||||||| |||||||   ||||||||||||| |||| |||||||||||||||||||||||    
T  5925943 tactattatttttatcattatcaagtatttaaaattaaataccataatttaaacactactaatgtgtgttctattttatgtgggacc 5925857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 13060399 - 13060512
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgg 297  Q
    ||||||||||| ||||||||||||| ||||| |||| |||||||||||| ||||||| |||||||||||||||  ||| |||  ||||| |||||||||     
T  13060399 aataaaaataagaattactattattgttatcattatcaagtatttaaaattaaataccgcaatttaaacactaccaatgtgtgagttcttttttatgtgt 13060498  T
Q  298 gacctccacactct 311  Q
    |||| |||||||||    
T  13060499 gaccaccacactct 13060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 27183183 - 27183269
Alignment:
Q  215 tactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||| |||| |||||||||||| |||||||   ||||||||||||| |||| |||||||||||||||||||||||    
T  27183183 tactattatttttatcattatcaagtatttaaaattaaataccataatttaaacactactaatgtgtgttctattttatgtgggacc 27183269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 31274451 - 31274560
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||||||||||||||  | | |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| ||||||    
T  31274451 aaaataataattactattatttttatcactgtcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacc 31274550  T
Q  302 tccacactct 311  Q
     |||||||||    
T  31274551 cccacactct 31274560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 311
Target Start/End: Original strand, 51698863 - 51698975
Alignment:
Q  203 aaaaataataattactattattttt--atcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtggg 298  Q
    ||||||||||||||||||| |||||  ||| |||| ||| |||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||||    
T  51698863 aaaaataataattactattttttttttatcattatcaagcatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtggg 51698962  T
Q  299 acctccacactct 311  Q
    ||| |||||||||    
T  51698963 acccccacactct 51698975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 311
Target Start/End: Original strand, 19102905 - 19103012
Alignment:
Q  206 aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacctc 303  Q
    ||||||||||| ||||||||| ||| |||| | |||||||||| ||||||   | ||||||||||||||||  | |||||||||||||||||||||||||    
T  19102905 aataataattattattattttcatcattatcaggtatttaaaattaaatatcactatttaaacactattaatgtgtgtgttctattttatgtgggacctc 19103004  T
Q  304 cacactct 311  Q
    ||||||||    
T  19103005 cacactct 19103012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 31766809 - 31766914
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtattt-aaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 300  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||| |||||||  |||||| |||||||||||  | ||||||||||||||||||||||    
T  31766809 aaaataataattactattatttttatcattatcaagtatttaaaaattaaataccacaattt-aacactattaatgtgtgtgttctattttatgtgggac 31766907  T
Q  301 ctccaca 307  Q
    | |||||    
T  31766908 ccccaca 31766914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 19907180 - 19907252
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacact 271  Q
    ||||||||||||||||| |||||||||||||| | || |||||||||||| ||||||| ||||||||||||||    
T  19907180 gaataaaaataataatttctattatttttatcatcatcaagtatttaaaattaaataccgcaatttaaacact 19907252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 203 - 303
Target Start/End: Complemental strand, 29349366 - 29349263
Alignment:
Q  203 aaaaataataattactattattttt-atcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtggga 299  Q
    |||||||||||||| |||||||||| ||| ||||  ||||||||||| ||||||| ||||||||||||||  |||| |||  ||||||||||||||||||    
T  29349366 aaaaataataattaatattattttttatcattatccagtatttaaaattaaataccgcaatttaaacactgctaatgtgtgagttctattttatgtggga 29349267  T
Q  300 cctc 303  Q
    ||||    
T  29349266 cctc 29349263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 204 - 301
Target Start/End: Complemental strand, 5270582 - 5270482
Alignment:
Q  204 aaaataataattactattatttttatcgttat-taagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 300  Q
    |||||||||| |||||||||||||||| ||||  |||||||||||| |||||||  ||||||||| |||| |||  | ||||||||||||||||||||||    
T  5270582 aaaataataactactattatttttatcattatcaaagtatttaaaattaaataccacaatttaaatactactaatgtgtgtgttctattttatgtgggac 5270483  T
Q  301 c 301  Q
    |    
T  5270482 c 5270482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 297
Target Start/End: Original strand, 23094042 - 23094141
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgg 297  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||   | ||||||| ||||| |||  | |||||| ||||||||||||    
T  23094042 aataaaaataataattactattatttttatcattatcaagtatttaaaattaaatctcgtaatttaatcactactaatgtgtgtgttttattttatgtgg 23094141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 48276003 - 48275889
Alignment:
Q  197 atgaataaa-aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgt 295  Q
    ||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||| |||||||  | |||||||||||  || | |||||| |||||||| |    
T  48276003 atgaataaacaataataattattattattttcatcattattaagtatttaaaaataaataccactatttaaacactgctagtgtgtgttatattttatat 48275904  T
Q  296 gggacctccacactct 311  Q
     ||||| |||||||||    
T  48275903 -ggacccccacactct 48275889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 6943740 - 6943819
Alignment:
Q  223 tttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 300  Q
    |||||||| |||| |||||||| ||| ||||||| |||||||||||| || |||  ||||||||||||||||||||||||    
T  6943740 tttttatcattatcaagtatttgaaattaaatacagcaatttaaacattactaatgtatgtgttctattttatgtgggac 6943819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 311
Target Start/End: Original strand, 12875340 - 12875450
Alignment:
Q  203 aaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtgggac 300  Q
    ||||||||||||||||||||| |||||| |||| || |||||||||  ||||||  | ||||||| | || |||| |||  |||||||||||||  ||||    
T  12875340 aaaaataataattactattatgtttatcattatcaaatatttaaaatcaaataccactatttaaatattactaatgtgtgggttctattttatgcaggac 12875439  T
Q  301 ctccacactct 311  Q
    | |||||||||    
T  12875440 ccccacactct 12875450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 40408896 - 40408975
Alignment:
Q  215 tactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata--tgtgttctattttat 293  Q
    |||||||||||||| | | || || ||||||||| ||||||| ||||||||||||||| |||||  |||||||||||||||    
T  40408896 tactattatttttaccat-atcaaatatttaaaattaaataccgcaatttaaacactaataatatgtgtgttctattttat 40408975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 16948929 - 16949017
Alignment:
Q  196 aatgaataaaaataataattactatt-atttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt 283  Q
    ||||| ||||| ||||||||||||||  |||||||| |||| ||||||| |||| |||||||   ||||| ||||||| ||||||||||    
T  16948929 aatgagtaaaactaataattactattcttttttatcattatcaagtattcaaaactaaatacaagaatttgaacactactaatatgtgt 16949017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 8028292 - 8028215
Alignment:
Q  219 attatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatg 294  Q
    |||||||||||| ||||||  ||||||||| |||||||  | |||||||||||| |||  | ||||||||||||||||    
T  8028292 attatttttatcattattagttatttaaaattaaatacaactatttaaacactactaatgtgtgtgttctattttatg 8028215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 28601560 - 28601617
Alignment:
Q  198 tgaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaata 255  Q
    |||||||||| ||| |||| ||||||||||||| ||| ||| ||||||||| ||||||    
T  28601560 tgaataaaaaaaattattattattatttttatcattactaaatatttaaaattaaata 28601617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 228
Target Start/End: Complemental strand, 39216262 - 39216233
Alignment:
Q  199 gaataaaaataataattactattattttta 228  Q
    ||||||||||||||||||||||||||||||    
T  39216262 gaataaaaataataattactattattttta 39216233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 8029417 - 8029385
Alignment:
Q  279 tgtgttctattttatgtgggacctccacactct 311  Q
    ||||||||||||||||||||||| |||||||||    
T  8029417 tgtgttctattttatgtgggacccccacactct 8029385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 20520893 - 20521007
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||  ||||||| ||||||||||||||| |||| ||||  ||||||||||||||    
T  20520893 gaataaaaataataattactattatttttatcattatcaagtatttaaagttaaataccgcaatttaaacactactaatgtgtgtattctattttatgtg 20520992  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  20520993 ggacccccacactct 20521007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 55432159 - 55432269
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtggg 298  Q
    |||||||||||||||||| ||| ||||||||| |||| || ||||||||| ||||||||||||||||||||||| |||| ||||||||||||| ||||||    
T  55432159 gaataaaaataataattaatataatttttatcattatcaaatatttaaaattaaatactgcaatttaaacactactaatgtgtgttctattttgtgtggg 55432258  T
Q  299 acctccacact 309  Q
    ||| |||||||    
T  55432259 acccccacact 55432269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 14437854 - 14437740
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||| ||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||    
T  14437854 gaataaaaataataattattattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtg 14437755  T
Q  297 ggacctccacactct 311  Q
     ||||||||||||||    
T  14437754 agacctccacactct 14437740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 7570374 - 7570265
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata--tgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||||  |||||||||||||||| ||||||    
T  7570374 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatatgtgtgttctattttatgcgggacc 7570275  T
Q  302 tccacactct 311  Q
     |||||||||    
T  7570274 cccacactct 7570265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 18472943 - 18473052
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||||||||    
T  18472943 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacc 18473042  T
Q  302 tccacactct 311  Q
     |||||||||    
T  18473043 cccacactct 18473052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 27709868 - 27709974
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctc 303  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||||||||| |    
T  27709868 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaacgtatgttctattttatgtgggacc-c 27709966  T
Q  304 cacactct 311  Q
    ||||||||    
T  27709967 cacactct 27709974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 204 - 309
Target Start/End: Original strand, 55326714 - 55326821
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    |||||||||| |||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||||||||||    
T  55326714 aaaataataactactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgggacc 55326813  T
Q  302 tccacact 309  Q
     |||||||    
T  55326814 cccacact 55326821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 39774984 - 39774890
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaata--tgtgttctattttatgtg 296  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||||  ||||||||||||||||||    
T  39774984 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatatgtgtgttctattttatgtg 39774890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 23660648 - 23660539
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||  |||||||||||||| |||  | |||||| |||||||||||||| |    
T  23660648 aaaataataattactattatttttatcactatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttttattttatgtgggagc 23660549  T
Q  302 tccacactct 311  Q
    ||||||||||    
T  23660548 tccacactct 23660539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 23665280 - 23665171
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||  |||||||||||||| |||  | ||||||||||||||| ||||| |    
T  23665280 aaaataataattactattatttttatcactatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatatgggagc 23665181  T
Q  302 tccacactct 311  Q
    ||||||||||    
T  23665180 tccacactct 23665171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 757522 - 757414
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||| |||||||  |||||||||||||| |||  | |||||||||||||||||| ||||    
T  757522 aaaataataattactattatttttatcattatcaagtattt-aaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgtgagacc 757424  T
Q  302 tccacactct 311  Q
     |||||||||    
T  757423 cccacactct 757414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 12965043 - 12964934
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagta-tttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 300  Q
    ||||||||||||||||||||||||||| |||| || || ||||||| ||||||| ||||||||||||||| |||  | |||||| |||||||||||||||    
T  12965043 aaaataataattactattatttttatcattatcaaatattttaaaattaaataccgcaatttaaacactactaaagtttgtgtt-tattttatgtgggac 12964945  T
Q  301 ctccacactct 311  Q
    | |||||||||    
T  12964944 caccacactct 12964934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 12970974 - 12970860
Alignment:
Q  199 gaataaaaataataattactattat-ttttatcgttattaagta-tttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatg 294  Q
    ||||||||||||||||||||||||| ||||||| ||||  |||| ||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||    
T  12970974 gaataaaaataataattactattattttttatcattatccagtattttaaaattaaataccgcaatttaaacactactaaagtgtgtgttctattttatg 12970875  T
Q  295 tgggacctccacact 309  Q
    ||||| | |||||||    
T  12970874 tgggatcaccacact 12970860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 18468149 - 18468228
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt 283  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| |||| |||||    
T  18468149 aaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgt 18468228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 46964945 - 46965058
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgt--gttctattttatgtg 296  Q
    ||||||||||||| |||| ||||||||||||| |||| |||||||||||| ||||||| ||| ||||||||||| |||| |||  |||||||||||||||    
T  46964945 gaataaaaataattattattattatttttatcattatcaagtatttaaaattaaataccgcagtttaaacacta-taatgtgtgagttctattttatgtg 46965043  T
Q  297 ggacctccacactct 311  Q
    || ||  ||||||||    
T  46965044 gggccctcacactct 46965058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 12111749 - 12111650
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtggg 298  Q
    |||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||||| | |||||||||   ||||   |||||||||||||||||| |    
T  12111749 gaataaaaataataattactattatttttatcattatcaagcatttaaaattaaataccgaaatttaaac---attacggtgtgttctattttatgtgag 12111653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 7860633 - 7860754
Alignment:
Q  195 gaatgaataaaaa-taataattactattattttt-atcgttattaagtatttaaaagt-aaatactgcaatttaaacactattaatatgtg--ttctatt 289  Q
    ||||||||||||| |||||| ||||||| ||||| ||| |||| |  ||||||||| | ||||||   |||||||||||||||||| ||||  |||||||    
T  7860633 gaatgaataaaaaataataaatactatttttttttatcattataagatatttaaaaattaaataccataatttaaacactattaatgtgtgtgttctatt 7860732  T
Q  290 ttatgtgggacctccacactct 311  Q
    ||||||||||||||||||||||    
T  7860733 ttatgtgggacctccacactct 7860754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 20175368 - 20175436
Alignment:
Q  242 tttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 311  Q
    ||||||| |||||||||||||||||| |||| |||| ||||||||||||||||||| ||| |||||||||    
T  20175368 tttaaaattaaatactgcaatttaaatactactaatgtgtgttctattttatgtggaacc-ccacactct 20175436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 29351156 - 29351268
Alignment:
Q  197 atgaataaa-aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttat 293  Q
    ||||||||| ||||||||||| ||||||||| ||| |||| |  ||||||||| |||||||  | |||||||||||| |||  | |||||| ||||||||    
T  29351156 atgaataaagaataataattattattattttcatcattatcagatatttaaaattaaataccactatttaaacactaataatgtgtgtgttttattttat 29351255  T
Q  294 gtgggacctccac 306  Q
    |||||||||||||    
T  29351256 gtgggacctccac 29351268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 301
Target Start/End: Complemental strand, 3656414 - 3656317
Alignment:
Q  206 aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatat--gtgttctattttatgtgggacc 301  Q
    ||||||||| | ||||||||| ||| |||| | |||||||||| |||||||  | |||||||||||| |||| |  ||||||||||||||||||||||    
T  3656414 aataataataattattattttcatcattatcaggtatttaaaattaaataccactatttaaacactactaatgtccgtgttctattttatgtgggacc 3656317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 2206946 - 2206881
Alignment:
Q  244 taaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgggacctccacactct 311  Q
    ||||| |||||||||| |||||||||||| | ||  ||||||||||||||||||| || |||||||||    
T  2206946 taaaattaaatactgctatttaaacactactgat--gtgttctattttatgtgggtcccccacactct 2206881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 3419925 - 3419956
Alignment:
Q  199 gaataaaaataataattactattatttttatc 230  Q
    ||||||||||||||||||||||||||||||||    
T  3419925 gaataaaaataataattactattatttttatc 3419956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 12256954 - 12257067
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaat--atgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||||| ||||   ||||||||||||||||||    
T  12256954 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgcgtgtgttctattttatgtg 12257053  T
Q  297 ggacctccacactct 311  Q
    ||||| |||||||||    
T  12257054 ggacc-ccacactct 12257067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 42625747 - 42625628
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatact-----gcaatttaaacactattaatatgt--gttctatttt 291  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||     ||||||||||||||| |||| |||  ||||||||||    
T  42625747 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaatactgcaccgcaatttaaacactactaatgtgtgagttctatttt 42625648  T
Q  292 atgtgggacctccacactct 311  Q
    |||||||||| |||||||||    
T  42625647 atgtgggacccccacactct 42625628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 12181912 - 12181802
Alignment:
Q  203 aaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 300  Q
    |||||| || |||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||||||    
T  12181912 aaaaatgattattactattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtgggac 12181813  T
Q  301 ctccacactct 311  Q
    | |||||||||    
T  12181812 ccccacactct 12181802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 12800322 - 12800405
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg 282  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |||| ||||    
T  12800322 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaatactgcaatttaaacactactaatgtgtg 12800405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 292
Target Start/End: Original strand, 16373280 - 16373373
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctatttta 292  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||| ||| ||||||||||||||||||| |||| |||||| |||||||    
T  16373280 gaataaaaataataatgactattatttttatcgttatcaggtatttaaaattaactactgcaatttaaacactactaatgtgtgttatatttta 16373373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 204 - 309
Target Start/End: Original strand, 26342144 - 26342251
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| ||||||   |||||||||||||| |||  | |||||||||||||||||||||||    
T  26342144 aaaataataattactattatttttatcattatcaagtatttaaaattaaatatcacaatttaaacactactaatgtgtgtgttctattttatgtgggacc 26342243  T
Q  302 tccacact 309  Q
     |||||||    
T  26342244 cccacact 26342251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 21672137 - 21672239
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||| |||||||||||| || |||| |||||  |||||||||||||    
T  21672137 gaataaaaataataattactattatttttatcattatcaagtatataaaattaaataccgcaatttaaacagtactaatgtgtgtgctctattttatgtg 21672236  T
Q  297 gga 299  Q
    |||    
T  21672237 gga 21672239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 4931160 - 4931269
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||||||||| ||||||    
T  4931160 aaaataataattactattatttttatcactatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctattttatgcgggacc 4931259  T
Q  302 tccacactct 311  Q
     |||||||||    
T  4931260 cccacactct 4931269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 6590177 - 6590079
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgg 297  Q
    |||||||||||||||| ||||||||||||| | |||| |||||||||||| |||||| | |||||||||||||| |||||| |||| ||||||||||||    
T  6590177 gaataaaaataataatgactattatttttagctttatcaagtatttaaaattaaataatacaatttaaacactactaatatatgttatattttatgtgg 6590079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 27246710 - 27246606
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtggg 298  Q
    |||||||||||||||| | ||||| ||||||| |||| |||||||||  | ||||||  |||||||||||||||||||| |||||||||||||||||| |    
T  27246710 gaataaaaataataatgattattagttttatcattatcaagtatttatgaataaatagcgcaatttaaacactattaatgtgtgttctattttatgtgag 27246611  T
Q  299 acctc 303  Q
    |||||    
T  27246610 acctc 27246606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 3046506 - 3046610
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||| ||| | | ||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||    
T  3046506 gaataaaaattatagtaattattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtg 3046605  T
Q  297 ggacc 301  Q
    |||||    
T  3046606 ggacc 3046610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 3880901 - 3881017
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa-----tatgtgttctattttatg 294  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||   |||||||| ||||| |||     | ||||||||||||||||    
T  3880901 aataaaaataataattactattatttttatcattatcaagtatttaaaattaaatatcacaatttaagcactactaatgatgtgtgtgttctattttatg 3881000  T
Q  295 tgggacctccacactct 311  Q
    || |||| |||||||||    
T  3881001 tgagacccccacactct 3881017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 295
Target Start/End: Complemental strand, 9815042 - 9814941
Alignment:
Q  197 atgaataaaaataataattactattatttttatcgttattaagtattt-aaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttat 293  Q
    |||||||||||||||||||||||||||||| ||  |||| |||||||| |||| ||||||| |||||||||| |||| |||  |||||||||||||||||    
T  9815042 atgaataaaaataataattactattattttcattattatcaagtatttaaaaattaaataccgcaatttaaaaactactaatgtatgtgttctattttat 9814943  T
Q  294 gt 295  Q
    ||    
T  9814942 gt 9814941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 295
Target Start/End: Complemental strand, 10716967 - 10716866
Alignment:
Q  197 atgaataaaaataataattactattatttttatcgttattaagtattt-aaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttat 293  Q
    |||||||||||||||||||||||||||||| ||  |||| |||||||| |||| ||||||| |||||||||| |||| |||  |||||||||||||||||    
T  10716967 atgaataaaaataataattactattattttcattattatcaagtatttaaaaattaaataccgcaatttaaaaactactaatgtatgtgttctattttat 10716868  T
Q  294 gt 295  Q
    ||    
T  10716867 gt 10716866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 8269232 - 8269304
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacact 271  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||  ||| ||||||||||    
T  8269232 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaatatcgcagtttaaacact 8269304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 13313474 - 13313364
Alignment:
Q  203 aaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 300  Q
    ||||| |||||||  ||||||||| ||| |||| |||||||||||| |||||||  | |||||||||||| |||  | ||||||||||||||||||||||    
T  13313474 aaaaaaaataattgttattattttcatcattatcaagtatttaaaattaaataccactatttaaacactactaatgtgtgtgttctattttatgtgggac 13313375  T
Q  301 ctccacactct 311  Q
     ||||||||||    
T  13313374 atccacactct 13313364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 10392256 - 10392139
Alignment:
Q  197 atgaataaaaataataattac-tattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactatta--atatgtgttctattttat 293  Q
    ||||||||||||||||||||| | || |||||||  |||| |||||||||||| ||||||| ||||||||||||||  ||  || |||||||||||||||    
T  10392256 atgaataaaaataataattacattttttttttattattatcaagtatttaaaattaaataccgcaatttaaacactgataacatgtgtgttctattttat 10392157  T
Q  294 gtgggacctccacactct 311  Q
    ||||| ||  ||||||||    
T  10392156 gtggggccctcacactct 10392139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 309
Target Start/End: Complemental strand, 26286325 - 26286210
Alignment:
Q  197 atgaataaa-aataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgt--tctattttat 293  Q
    ||||||||| ||||||||| | ||||||||| ||| |||| |  ||||||||| |||||||  | |||||||||||| |||| |||||  ||||||||||    
T  26286325 atgaataaagaataataataattattattttcatcattatcagttatttaaaattaaataccactatttaaacactactaatgtgtgtgttctattttat 26286226  T
Q  294 gtgggacctccacact 309  Q
    |||||||| |||||||    
T  26286225 gtgggacccccacact 26286210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 23247701 - 23247618
Alignment:
Q  220 ttatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggacc 301  Q
    ||||||||||| |||| |||||||||||| ||||||| | ||||||||||||| |||  | ||| |||||||||| ||||||||    
T  23247701 ttatttttatcattatcaagtatttaaaattaaataccgtaatttaaacactactaatgtttgttttctattttaggtgggacc 23247618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 23152230 - 23152177
Alignment:
Q  201 ataaaaataataattactattatttttatcgttattaagtatttaaaagtaaat 254  Q
    |||||||||||||| | ||||||||||||| |||| |||| ||||||| |||||    
T  23152230 ataaaaataataataattattatttttatcattatcaagtttttaaaattaaat 23152177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 6164 - 6278
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||  |||||||||||| | |||| ||||  |||||| |||||||    
T  6164 gaataaaaataataattactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacaccactaatgtgtgtattctatcttatgtg 6263  T
Q  297 ggacctccacactct 311  Q
    ||||||| |||||||    
T  6264 ggacctcaacactct 6278  T

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Target: scaffold0240 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 4903 - 5002
Alignment:
Q  199 gaataaaaataataattactattattttt-atcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatatgtgttctattttatgtgg 297  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||| |||| |||||||| | ||||||||||| ||||||||||||    
T  4903 gaataaaaataataattactattattttttatcattatcaagtatttaaaattaaataccgcaacttaaacacaactaatatgtgttatattttatgtgg 5002  T

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Target: scaffold0054 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 30109 - 30211
Alignment:
Q  199 gaataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtg 296  Q
    |||||||||||||||||||||||||||||||| |||| | ||| |||||| ||||||| ||||||||||||||| |||  | ||||||||||||||||||    
T  30109 gaataaaaataataattactattatttttatcattatcatgtagttaaaattaaataccgcaatttaaacactactaatgtgtgtgttctattttatgtg 30208  T
Q  297 gga 299  Q
    |||    
T  30209 gga 30211  T

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Target: scaffold0054; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 26413 - 26487
Alignment:
Q  239 gtatttaaaagtaaatactgcaatttaaacactattaatatgtg--ttctattttatgtgggacctccacactct 311  Q
    |||||||||| |||||||  | |||||||||||| |||| ||||  |||||||||||||||||||||| ||||||    
T  26413 gtatttaaaattaaatacctctatttaaacactactaatgtgtgtgttctattttatgtgggacctccgcactct 26487  T

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Target: scaffold0002 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 5001 - 5110
Alignment:
Q  204 aaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaatat--gtgttctattttatgtgggacc 301  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| |||||||  |||||||||||||| |||| |  ||||||||||||||| ||||||    
T  5001 aaaataataattactattatttttatcactatcaagtatttaaaattaaataccacaatttaaacactactaatgtgagtgttctattttatgcgggacc 5100  T
Q  302 tccacactct 311  Q
     |||||||||    
T  5101 cccacactct 5110  T

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Target: scaffold0002; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 443102 - 442990
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgg 297  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||| |||||||  |||||||||| | | |||  | |||||||||||||||||||    
T  443102 aataaaaataataattactattatttttatcattatcaaatatttaaaattaaataccacaatttaaacccaactaatgtgtgtgttctattttatgtgg 443003  T
Q  298 gacctccacactct 311  Q
    |||| |||||||||    
T  443002 gacc-ccacactct 442990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 8045 - 8155
Alignment:
Q  204 aaaataataattactattattttt-atcgttattaagtatttaaaagtaaatactgcaatttaaacactattaa--tatgtgttctattttatgtgggac 300  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||| |||||||  |||||||||||||| |||  | |||||||||| |||||||||||    
T  8045 aaaataataattactattattttttatcattatcaagtatttaaaattaaataccacaatttaaacactactaatgtgtgtgttctatcttatgtgggac 8144  T
Q  301 ctccacactct 311  Q
    | |||||||||    
T  8145 ccccacactct 8155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 36055 - 36167
Alignment:
Q  200 aataaaaataataattactattatttttatcgttattaagtatttaaaagtaaatactgcaatttaaacactattaat--atgtgttctattttatgtgg 297  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||| ||| ||||||||||| ||||   || ||||||||||||||||    
T  36055 aataaaaataataattactattatttttatcattatcaaatatttaaaattaaataccgcagtttaaacactactaatgcgtgagttctattttatgtgg 36154  T
Q  298 gacctccacactct 311  Q
    | || |||||||||    
T  36155 ggcc-ccacactct 36167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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