View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10188_low_20 (Length: 259)

Name: NF10188_low_20
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10188_low_20
NF10188_low_20
[»] chr1 (5 HSPs)
chr1 (117-216)||(33290599-33290698)
chr1 (143-229)||(33137225-33137311)
chr1 (28-103)||(33290777-33290852)
chr1 (138-206)||(33177791-33177859)
chr1 (150-206)||(33155012-33155068)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 33290698 - 33290599
Alignment:
Q  117 accatttgcttggagatattccagctctcaaggctataaatagggcactgaagctaccactcaaatcacaaaaaatcttagcttctaaactataatccac 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33290698 accaattgcttggagatattccagctctcaaggctataaatagggcactgaagctaccactcaaatcacaaaaaatcttagcttctaaactataatccac 33290599  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 33137225 - 33137311
Alignment:
Q  143 ctcaaggctataaatagggcactgaagctaccactcaaatcacaaaaaatcttagcttctaaactataatccacaagagtatttcta 229  Q
    |||||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||| |||| |||||| |||| |||||    
T  33137225 ctcaaggctataaatagggcactgaagctaccacacaaaacacacaaaatctttgcttctaaaccataacccacaaaagtaattcta 33137311  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 33290852 - 33290777
Alignment:
Q  28 aagagagacgttaaccatctcaattatctcggtcaatataagttattagtctcagtgcaaagtaacactttgatta 103  Q
    |||||||||||||||||| ||||||||||| ||  ||||||||||||||||||| |||| ||||||||||| ||||    
T  33290852 aagagagacgttaaccatatcaattatctcagtacatataagttattagtctcactgcacagtaacactttaatta 33290777  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 33177791 - 33177859
Alignment:
Q  138 cagctctcaaggctataaatagggcactgaagctaccactcaaatcacaaaaaatcttagcttctaaac 206  Q
    |||||||||||||||||||||||||||| |||| ||||| |||| |||  |||||||| ||||||||||    
T  33177791 cagctctcaaggctataaatagggcactaaagcaaccacacaaagcacgcaaaatctttgcttctaaac 33177859  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 33155012 - 33155068
Alignment:
Q  150 ctataaatagggcactgaagctaccactcaaatcacaaaaaatcttagcttctaaac 206  Q
    ||||||||||||||||||||| ||||| |||| |||| |||||||| ||||||||||    
T  33155012 ctataaatagggcactgaagcaaccacacaaagcacacaaaatctttgcttctaaac 33155068  T

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