View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_21 (Length: 258)
Name: NF10188_low_21
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2667254 - 2667014
Alignment:
| Q |
1 |
cgggttgttgtagttgtttttgttgtgaaatggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2667254 |
cgggttgttgtagttgtttttgttgtgaaatggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgcca |
2667155 |
T |
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| Q |
101 |
tacccttaaccttctcacctgtctgttgcaaaaacccagctgagttgtcctttcctgattgggcagtttcttttgtagcctggcccatttcataaccctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2667154 |
tacccttaaccttctcacctgtctgttgcaaaaacccagctgagttgtcctttcctgattgggcagtttcttttgtagcctggcccatttcataaccctt |
2667055 |
T |
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| Q |
201 |
gtctcttgcttgaccagttgtgtcttgggttttatcctttg |
241 |
Q |
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| T |
2667054 |
gtctcttgcttgaccagttgtgtcttgggttttatcctttg |
2667014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2676272 - 2676032
Alignment:
| Q |
1 |
cgggttgttgtagttgtttttgttgtgaaatggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2676272 |
cgggttgttgtagttgtttttgttgtgaaatggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgcca |
2676173 |
T |
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| Q |
101 |
tacccttaaccttctcacctgtctgttgcaaaaacccagctgagttgtcctttcctgattgggcagtttcttttgtagcctggcccatttcataaccctt |
200 |
Q |
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| T |
2676172 |
tacccttaaccttctcacctgtctgttgcaaaaacccagctgagttgtcctttcctgattgggcagtttcttttgtagcctggcccatttcataaccctt |
2676073 |
T |
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| Q |
201 |
gtctcttgcttgaccagttgtgtcttgggttttatcctttg |
241 |
Q |
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| T |
2676072 |
gtctcttgcttgaccagttgtgtcttgggttttatcctttg |
2676032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 2682281 - 2682060
Alignment:
| Q |
20 |
ttgttgtgaaatggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgccatacccttaaccttctcacc |
119 |
Q |
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||||||||| ||||||||| |||||||| |||| |||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||| || || |
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| T |
2682281 |
ttgttgtgatatggtccttatcttcctcgtcatgtgccattccaaaagtgttcttaactgcttcagtagcactttgggccatacccttaaccttttctcc |
2682182 |
T |
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| Q |
120 |
tgtctgttgcaaaaacccagctgagttgtcctttcctgattgggcagtttcttttgtagcctggcccatttcataacccttgtctcttgcttgaccagtt |
219 |
Q |
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|||||| || || ||||| ||||||||||| ||||||||||||||||||||||| || | |||||| || || | || || ||||| |||||||||||| |
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| T |
2682181 |
tgtctgctgtaagaaccctgctgagttgtcttttcctgattgggcagtttctttggttgactggccaatctccgatcctttttctctagcttgaccagtt |
2682082 |
T |
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| Q |
220 |
gtgtcttgggttttatcctttg |
241 |
Q |
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|||||||||| ||| ||||||| |
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| T |
2682081 |
gtgtcttgggctttttcctttg |
2682060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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