View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_23 (Length: 250)
Name: NF10188_low_23
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_23 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 33241658 - 33241905
Alignment:
| Q |
1 |
ttgaagtggttgacagatagtgaaagtaatatgacacgagtaaaaagtaatagtgaaagtcaattgctccttttagcatgaaatccaaactcttactcaa |
100 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33241658 |
ttgaagtggtggatagatagtgaaagtaatatgacacgagtaaaaagtaatagtgaaagttaattgctccttttagcatgaaatccaaactcttactcaa |
33241757 |
T |
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| Q |
101 |
gctttactctaagtgaggctttatccattaaggttctaannnnnnncaatgcaaattagatcaacttaattatctttggttgtaaagtnnnnnnnnnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33241758 |
gctttactctaagtgaggctttatccattaaggttctaatttttttcaatgcaaattacatcaacttaattatctttggttgtaaagtaaaaaaaaaaaa |
33241857 |
T |
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| Q |
201 |
nnnntcattctcaacaagtgtttgttttcacatttctctgaggttgtttc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33241858 |
aaca--attctcaacaagtgtttgttttcacatttctctgaggttgtttc |
33241905 |
T |
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