View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10188_low_24 (Length: 248)

Name: NF10188_low_24
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10188_low_24
NF10188_low_24
[»] chr6 (12 HSPs)
chr6 (45-234)||(31189582-31189771)
chr6 (45-222)||(31201389-31201566)
chr6 (45-227)||(31145524-31145706)
chr6 (45-227)||(31171837-31172019)
chr6 (46-227)||(31224385-31224566)
chr6 (54-222)||(30992367-30992535)
chr6 (46-222)||(30955140-30955316)
chr6 (54-221)||(30960886-30961053)
chr6 (46-222)||(30944880-30945056)
chr6 (59-222)||(31229670-31229833)
chr6 (46-221)||(31214122-31214297)
chr6 (146-222)||(30986203-30986279)
[»] chr8 (1 HSPs)
chr8 (99-217)||(44035561-44035679)
[»] chr1 (6 HSPs)
chr1 (57-175)||(49710692-49710811)
chr1 (53-139)||(49725145-49725231)
chr1 (57-175)||(49215355-49215473)
chr1 (57-175)||(49687989-49688107)
chr1 (57-168)||(49683090-49683201)
chr1 (57-168)||(49714341-49714452)
[»] chr7 (4 HSPs)
chr7 (60-169)||(31618457-31618566)
chr7 (60-202)||(31541209-31541351)
chr7 (63-172)||(31438946-31439055)
chr7 (53-118)||(31585590-31585655)
[»] chr4 (1 HSPs)
chr4 (57-141)||(15063324-15063408)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 31189582 - 31189771
Alignment:
Q  45 ggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtgg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31189582 ggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtgg 31189681  T
Q  145 tacatcctctatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagatgtaattctctctg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31189682 tacatcctctatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagatgtaattctctctg 31189771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 31201389 - 31201566
Alignment:
Q  45 ggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtgg 144  Q
    ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||    
T  31201389 ggacaaagttttgcaagtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggttttatgtcgaaatgtaaaattcgagtgg 31201488  T
Q  145 tacatcctctatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagatg 222  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  31201489 tacatcctctatgcaagtactctagtccacgagctattccttttgcaatttgatacaaattatcccaactcaaagatg 31201566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 31145524 - 31145706
Alignment:
Q  45 ggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtgg 144  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||  ||||    
T  31145524 ggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtgg 31145623  T
Q  145 tacatcctctatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagatgtaatt 227  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  31145624 tacatcctctatgcaagtactctagcccacgagctatcccttttgcaatttgatacaaattctcccaactcaaagatgcaatt 31145706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 31171837 - 31172019
Alignment:
Q  45 ggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtgg 144  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||  ||||    
T  31171837 ggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtgg 31171936  T
Q  145 tacatcctctatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagatgtaatt 227  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  31171937 tacatcctctatgcaagtactctagcccacgagctatcccttttgcaatttgatacaaattctcccaactcaaagatgcaatt 31172019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 31224566 - 31224385
Alignment:
Q  46 gacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggt 145  Q
    |||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||||    
T  31224566 gacatagttttgcaagtccaaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttttatgtcaaaatgtaaaattctagtggt 31224467  T
Q  146 acatcctctatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagatgtaatt 227  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  31224466 acatcctccatgcaagtactctagtccacgagctatcccttttgcaattttatacaatttatcccaactcaaagatgcaatt 31224385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 30992535 - 30992367
Alignment:
Q  54 tttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctc 153  Q
    ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||  |||| ||||||||    
T  30992535 tttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtggcacatcctc 30992436  T
Q  154 tatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagatg 222  Q
    ||||||| || ||||| ||||||||||||||||| |||||||||| || |||||||||||| |||||||    
T  30992435 tatgcaaatattctagcccacgggctatccctttcgcaatttgatgcatattatcccaacttaaagatg 30992367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 30955316 - 30955140
Alignment:
Q  46 gacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggt 145  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |  ||  |    
T  30955316 gacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatccgggtatt 30955217  T
Q  146 acatcctctatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagatg 222  Q
    |||||| |||||||| ||||| |  || || ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  30955216 acatcccctatgcaaatactccaaacctcgagctatccctttggcaatttgatagaaattatcccaactcaaagatg 30955140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 30961053 - 30960886
Alignment:
Q  54 tttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctc 153  Q
    ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||  || | ||||||||    
T  30961053 tttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagtagcacatcctc 30960954  T
Q  154 tatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagat 221  Q
    ||||||| || ||||| ||||||||||||||||| |||||||||| || || ||||||||| ||||||    
T  30960953 tatgcaaatattctagcccacgggctatccctttcgcaatttgatgcatatcatcccaacttaaagat 30960886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 30945056 - 30944880
Alignment:
Q  46 gacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggt 145  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |   |  |    
T  30945056 gacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgcggttttatgtcaaaatgtaaaatccggatatt 30944957  T
Q  146 acatcctctatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagatg 222  Q
    ||| || |||||||| ||||| |  |  || ||||||||||| |||||||||||||||||||||||||| |||||||    
T  30944956 acaccccctatgcaaatactccaaacttcgagctatccctttggcaatttgatacaaattatcccaacttaaagatg 30944880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 31229833 - 31229670
Alignment:
Q  59 aagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctatgc 158  Q
    ||||||||||||||| || |||||||| |||||||||| ||| || |||||||||||||| ||||| |||||||| ||||  ||| |||||||  |||||    
T  31229833 aagtccaaaatctgatatctttggacaaaaattctcatataagaggatgttatgtggtttgatgtcaaaatgtaagattcaagtgctacatcccttatgc 31229734  T
Q  159 aagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagatg 222  Q
    |||||||| || || || ||||||||||| ||||||||||| | | | |||||||||| |||||    
T  31229733 aagtactcaagccctcgagctatccctttcgcaatttgataaagaatgtcccaactcagagatg 31229670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 221
Target Start/End: Complemental strand, 31214297 - 31214122
Alignment:
Q  46 gacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggt 145  Q
    |||| ||| ||||||||||||||||||| || |||||||| ||||| |||||||| | ||| |||||||||||||| || |||||||||||||  ||  |    
T  31214297 gacaaagtcttgcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggttttatatcaaaatgtaaaattcgagtact 31214198  T
Q  146 acatcctctatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagat 221  Q
     ||||||||||||| |||||| |  || || ||||||||||| ||||||| ||| | | | |||||||||| ||||    
T  31214197 gcatcctctatgcaggtactccaaccctcgagctatccctttagcaatttcataaagaatctcccaactcagagat 31214122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 30986279 - 30986203
Alignment:
Q  146 acatcctctatgcaagtactctagtccacgggctatcccttttgcaatttgatacaaattatcccaactcaaagatg 222  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |||||||||| || |||||||||||| |||||||    
T  30986279 acatcctctatgcaaatattctagcccacgggctatccctttcgcaatttgatgcatattatcccaacttaaagatg 30986203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 44035679 - 44035561
Alignment:
Q  99 aaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctatgcaagtactctagtccacgggctatcccttttgcaatttgat 198  Q
    |||||||||||||||||||| ||||||||||| ||||| || ||| | || ||| ||||||||||||||||||| || ||||||||| ||||||| || |    
T  44035679 aaaagaatgttatgtggtttaatgtcgaaatgaaaaatcctagtgttgcaccctttatgcaagtactctagtcctcgagctatccctattgcaatctggt 44035580  T
Q  199 acaaattatcccaactcaa 217  Q
      ||||| |||||||||||    
T  44035579 gtaaattctcccaactcaa 44035561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 49710811 - 49710692
Alignment:
Q  57 gcaagtccaaaatctgaaatttttggacataaattc-tcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctcta 155  Q
    ||||||||||||||||||||||||||||| |||||  |||||||  |  || ||||| ||||||||||| ||||| || ||||| ||| | || |||||     
T  49710811 gcaagtccaaaatctgaaatttttggacaaaaattaatcatctagtaatatattatgaggttttatgtcaaaatgcaagattctagtgttgcagcctctg 49710712  T
Q  156 tgcaagtactctagtccacg 175  Q
    ||||||||||||||||||||    
T  49710711 tgcaagtactctagtccacg 49710692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 49725231 - 49725145
Alignment:
Q  53 ttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattct 139  Q
    |||||||||||||||||| |||||| | ||    ||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||    
T  49725231 ttttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggttttatgtcaaaatgcaaaattct 49725145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 49215473 - 49215355
Alignment:
Q  57 gcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctat 156  Q
    ||||||||||||||||||||||| ||||| ||||  ||| |||  |  || ||||| ||| ||||||| ||||| || ||||| ||| |||| ||||| |    
T  49215473 gcaagtccaaaatctgaaattttcggacaaaaatcatcagctagtaatatattatgaggtcttatgtcaaaatgcaagattctagtgttacagcctctgt 49215374  T
Q  157 gcaagtactctagtccacg 175  Q
    |||||||||||| ||||||    
T  49215373 gcaagtactctaatccacg 49215355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 49688107 - 49687989
Alignment:
Q  57 gcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctat 156  Q
    |||||||||||||| ||| ||||||| || ||||||||||| |  |  || ||||| ||||||||||| |||||||| ||||| ||| | || ||||||     
T  49688107 gcaagtccaaaatcagaattttttgggcagaaattctcatcaagtaatatattatgaggttttatgtcaaaatgtaagattctagtgttgcagcctctac 49688008  T
Q  157 gcaagtactctagtccacg 175  Q
    | || ||||||||||||||    
T  49688007 gaaaatactctagtccacg 49687989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 49683201 - 49683090
Alignment:
Q  57 gcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctat 156  Q
    ||||||||||||||||||||||||||||| ||||  || || |  |  || ||||| ||||||||||| |||||||| ||||| ||| | || ||||| |    
T  49683201 gcaagtccaaaatctgaaatttttggacacaaatcatcgtcaagtaatatattatgaggttttatgtcaaaatgtaagattctagtgttgcagcctctgt 49683102  T
Q  157 gcaagtactcta 168  Q
    ||| ||||||||    
T  49683101 gcatgtactcta 49683090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 49714452 - 49714341
Alignment:
Q  57 gcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctat 156  Q
    |||||||| |||||||||||||| ||||| ||||  ||||| |  |  || ||||| ||||| ||||| |||||||| ||||| ||| |||| ||||| |    
T  49714452 gcaagtccgaaatctgaaattttaggacagaaatcttcatcaagtaatatattatgaggtttaatgtcaaaatgtaagattctagtgttacagcctctgt 49714353  T
Q  157 gcaagtactcta 168  Q
    ||||||||||||    
T  49714352 gcaagtactcta 49714341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 31618457 - 31618566
Alignment:
Q  60 agtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctatgca 159  Q
    |||||||||||||| ||||||||||| ||||  ||||| ||||||||||| || |||||||| || | ||||| ||| ||||   ||||||||  |||||    
T  31618457 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatccttgaactacatccttgatgca 31618556  T
Q  160 agtactctag 169  Q
    ||||||||||    
T  31618557 agtactctag 31618566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 31541209 - 31541351
Alignment:
Q  60 agtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctatgca 159  Q
    ||||||||||| || ||||| || || ||||| ||||| ||||||||||| |||||||| || || | ||| ||||||||||   ||||||||  |||||    
T  31541209 agtccaaaatcagagattttggggcaaaaattttcatccaaaagaatgttttgtggtttgatatcaagatgcaaaattcttgaaatacatccttgatgca 31541308  T
Q  160 agtactctagtccacgggctatcccttttgcaatttgatacaa 202  Q
    |||| |||||||| || || || ||  |||||||||| |||||    
T  31541309 agtattctagtcctcgagcaattccgattgcaatttggtacaa 31541351  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 31439055 - 31438946
Alignment:
Q  63 ccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctatgcaagt 162  Q
    |||||||| || ||||||||||| ||||  ||||||||||||||||| || ||||| || || | ||| ||||||||||   |||| |||  ||| ||||    
T  31439055 ccaaaatcagatatttttggacaaaaatcttcatctaaaagaatgttttgaggtttgatatcaagatgcaaaattcttgaaatacaaccttgatgtaagt 31438956  T
Q  163 actctagtcc 172  Q
    ||||||||||    
T  31438955 actctagtcc 31438946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 31585590 - 31585655
Alignment:
Q  53 ttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttt 118  Q
    |||||| ||||||||||| || ||||||||||| ||||  ||||| ||||||||||| || |||||    
T  31585590 ttttgctagtccaaaatcagatatttttggacaaaaatcttcatccaaaagaatgttttggggttt 31585655  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 15063408 - 15063324
Alignment:
Q  57 gcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttg 141  Q
    ||||| |||||||| || |||||||| || ||||  ||||||||||||||||| || ||||| || || | ||| ||||||||||    
T  15063408 gcaagaccaaaatcagatatttttgggcaaaaatcttcatctaaaagaatgttttgaggtttgatatcaagatgcaaaattcttg 15063324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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