View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10188_low_25 (Length: 247)
Name: NF10188_low_25
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38369265 - 38369507
Alignment:
| Q |
1 |
tctaaataagtatgcaatgtaggatgagtagattcagaaattatgttggtaagttcaaagaaattattcaagaatgcacaaaccttctctcctctttccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38369265 |
tctaaataagtatgcaatgtaggatgagtagattcagaaattatgttggtaagttcaaagaaattattcaagaatgcacaaaccttctctcctctttccc |
38369364 |
T |
|
| Q |
101 |
actcttcactggatgggcaatcgctatatgctgtatcatttaaacccatgt-------attcaaaggcactgcgatatttgattgcattcttaagcatcg |
193 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38369365 |
actcttcactggatgggcaatcactatatgctgtatcatttaaacccatgtgttcaaacttcaaaggcactgcgatatttgattgcattcttaagcatcg |
38369464 |
T |
|
| Q |
194 |
tataagtagaaacccatttaccggacacatccaaatgcaagcc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38369465 |
tataagtagaaacccatttaccggacacatccaaatgcaagcc |
38369507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 38379187 - 38379401
Alignment:
| Q |
22 |
ggatgagtagattcagaaattatgttggtaagttcaaagaaattattcaagaatgcacaaaccttctctcctctttcccactcttcactggatgggcaat |
121 |
Q |
| |
|
|||| |||||||| |||||| || |||||||| || | ||| | ||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
38379187 |
ggataagtagattgagaaatcatagtggtaagtccataaaaaatcttcaagaattcacaaatcttctctcctctttcccactcttcactcgatggacaat |
38379286 |
T |
|
| Q |
122 |
cgctatatgctgtatcatttaaacccatgtattcaaaggcactgcgatatttgattgcattcttaagcatcgtataagtagaaacccatttaccggacac |
221 |
Q |
| |
|
|||||||| |||||| || |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38379287 |
ggctatatgatgtatccttcaaacacatgtgttcaaaggcactgcgatattcgattgcattcttaagcatcgtataagtagaaatccatttaccggacac |
38379386 |
T |
|
| Q |
222 |
atccaaatgcaagcc |
236 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38379387 |
atccaaatgcaagcc |
38379401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 68 - 235
Target Start/End: Original strand, 38374069 - 38374236
Alignment:
| Q |
68 |
tcaagaatgcacaaaccttctctcctctttcccactcttcactggatgggcaatcgctatatgctgtatcatttaaacccatgtattcaaaggcactgcg |
167 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
38374069 |
tcaagaattcacaaattttctctcctctttcccactcttcacttgatgggcaatgattatatgttgtatcttttaaacacatgtgttcaaaggcactgcg |
38374168 |
T |
|
| Q |
168 |
atatttgattgcattcttaagcatcgtataagtagaaacccatttaccggacacatccaaatgcaagc |
235 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38374169 |
atatttgattgcactcttaagcatcagataagtagagacccatttaccggacacatccaaatgcaagc |
38374236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University