View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_27 (Length: 239)
Name: NF10188_low_27
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38369283 - 38369061
Alignment:
| Q |
1 |
cattgcatacttatttagatcatattttggggataaagttttcattgnnnnnnntgatgttgatcgaagatgacaagataagagatatggcttcaaagat |
100 |
Q |
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| T |
38369283 |
cattgcatacttatttagatcatattttggggataaagttttcattgaaaaaaatgatgttgatcgaagatgacaagataagagatatggcttcaaagat |
38369184 |
T |
|
| Q |
101 |
gtcgaatgagtttgacaagtatatgagtgaatatagcatgattcttgcttttggttgtgttttagatcctcgtttgaagttcgaatctttgaagtatctg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38369183 |
gttgaatgagtttgacaagtatatgagtgaatatagcatgattcttgcttttggttgtgttttagatcctcgtttgaagttcgaatctttgaagtatctg |
38369084 |
T |
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| Q |
201 |
ttcgaaaaattaggtcatgatac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38369083 |
ttcgaaaaattaggtcatgatac |
38369061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 38379156 - 38378970
Alignment:
| Q |
29 |
ggggataaagttttcattgnnnnnnntgatgttgatcgaagatgacaagataagagatatggcttcaaagatgtcgaatgagtttgacaagtatatgagt |
128 |
Q |
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||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
38379156 |
ggggatagagttttcattgaaaaaaatgatgttgagtgaagatgacgagataagagatatggcttcaaagatgtcaaatgagtttgacaagtatttgagt |
38379057 |
T |
|
| Q |
129 |
gaatatagcatgattcttgcttttggttgtgttttagatcctcgtttgaagttcgaatctttgaagtatctgttcgaaaaattaggt |
215 |
Q |
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| T |
38379056 |
gaatatagcatgattcttgcatttggttgtgttttaaatccttatttgaagttcgaatatttggagtatctatacgaaaaattaggt |
38378970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 38374015 - 38373798
Alignment:
| Q |
6 |
catacttatttagatcatattttggggataaagttttcattgnnnnnnntgatgttgatcgaagatgacaagataagagatatggcttcaaagatgtcga |
105 |
Q |
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|||||| |||| | |||||||||||||||| ||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||| || |
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| T |
38374015 |
catactcattttgttcatattttggggatagagttttcattgaaaaaaatgatgttgagcgaagatgacacgataagagacatggcttcaaagatgttga |
38373916 |
T |
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| Q |
106 |
atgagtttgacaagtatatgagtgaatatagcatgattcttgcttttggttgtgttttagatcctcgtttgaagttcgaatctttgaagtatctgttcga |
205 |
Q |
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||||||||||||| | | |||||||||||||| |||||||||| |||| ||||||||| |||||||| |||||||| ||| |||| ||||||| | ||| |
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| T |
38373915 |
atgagtttgacaattgtttgagtgaatatagcgtgattcttgcacttgggtgtgttttaaatcctcgtctgaagttcaaatttttggagtatctatacga |
38373816 |
T |
|
| Q |
206 |
aaaattaggtcatgatac |
223 |
Q |
| |
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|||||||||||||||||| |
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| T |
38373815 |
aaaattaggtcatgatac |
38373798 |
T |
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