View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_28 (Length: 238)
Name: NF10188_low_28
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33241927 - 33242150
Alignment:
| Q |
1 |
tccataggaaccttatacttttcctcataaaatatgtttcatttagaaattgcgaaccattaaagcaactttcacatgaaccaaatacttgttctgaaca |
100 |
Q |
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| T |
33241927 |
tccataggaaccttatacttttcctcataaaatatgtttcatttagaaattgcgaaccattaaagcaactttcacatgaaccaaatacttgttctgaaca |
33242026 |
T |
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| Q |
101 |
ataatgtttcatttagaaattgcttacatttggacatattgtgaataagagagatagcttggaaacaagaaagattgatatattgattctccttgactta |
200 |
Q |
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| T |
33242027 |
ataatgtttcatttagaagttgcttacattaggacatattgtgaataagagagaaagcttggaaacaagaaagattgatatattgattctccttgactta |
33242126 |
T |
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| Q |
201 |
ttgaatgaagattacatagtatgt |
224 |
Q |
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| T |
33242127 |
ttgaatgaagattacatagtatgt |
33242150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 33248575 - 33248634
Alignment:
| Q |
163 |
aaacaagaaagattgatatattgattctccttgacttattgaatgaagattacatagtat |
222 |
Q |
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| T |
33248575 |
aaacaagaaagattgatatattgattctccttgacttattgaatgaagattacgtagtat |
33248634 |
T |
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