View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_30 (Length: 237)
Name: NF10188_low_30
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 52725381 - 52725193
Alignment:
| Q |
10 |
gagaagaattaagaagaattatctaacaagaacgctaaacaaaaaatttaggtgcaagagggattaaaatacaagtaaagattacgtatagaaagttttg |
109 |
Q |
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| T |
52725381 |
gagaagaattaagaagaattatctaacaagaatgctaaacaaaagatttaggtgcaagagggattaaaatacaaataaagattacgtatagaaagttttg |
52725282 |
T |
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| Q |
110 |
ctaaatacatcgaatgaatcatcccgaaatcatcacggatataaaactaattgatnnnnnnnttgcacatggacggaatacatgagaagt |
199 |
Q |
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| T |
52725281 |
ctaaatacatcgaatgaatcatcccgaaatcatcacggatataaaactaattgat-aaaaaattgcacatggatggaatacatgagaagt |
52725193 |
T |
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