View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_33 (Length: 207)
Name: NF10188_low_33
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_33 |
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| [»] scaffold0243 (1 HSPs) |
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Alignment Details
Target: scaffold0243 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: scaffold0243
Description:
Target: scaffold0243; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 21855 - 21693
Alignment:
| Q |
20 |
aatatgaaattgcatcaatatggagcatggaatgaattggaatccagcaattatcacataatcgatggaaaacaaaagaagcaatgcagaacttaaagca |
119 |
Q |
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| T |
21855 |
aatatggaattgcatcaatatggaacatggaatgaatgggaatccagcaattataacataaccgatggaaaacaaaagaagcaatgcagaacttcaagca |
21756 |
T |
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| Q |
120 |
taaaacggcaattaatttggatttggaacagcgacgtgaaagtaattaagcagcaataacaaa |
182 |
Q |
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||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
21755 |
taaaacgacaattaatttggatttggaaccgtaacgtgaaagtaattaagcagcaataacaaa |
21693 |
T |
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Back To:
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Target: chr7 (Bit Score: 119; Significance: 5e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 19243489 - 19243651
Alignment:
| Q |
20 |
aatatgaaattgcatcaatatggagcatggaatgaattggaatccagcaattatcacataatcgatggaaaacaaaagaagcaatgcagaacttaaagca |
119 |
Q |
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| T |
19243489 |
aatatggaattgcatcaatatggaacatggaatgaattggaatccagcaattataacaaaaccgatggaaaacaaaagaagcaatacagaacataaagca |
19243588 |
T |
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| Q |
120 |
taaaacggcaattaatttggatttggaacagcgacgtgaaagtaattaagcagcaataacaaa |
182 |
Q |
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| T |
19243589 |
taaaacgacaattaatttggatttggaaccgtaacgtgaaagtaattaagcagcaataacaaa |
19243651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 39867518 - 39867367
Alignment:
| Q |
20 |
aatatgaaattgcatcaatatggagcatggaatgaattggaatccagcaattatcacataatcgatggaaaacaaaagaagcaatgcagaacttaaagca |
119 |
Q |
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| T |
39867518 |
aatatggaattgcatcaatatggaacatggaatgaattgga--------------acataaccgatggaaaaccaaagaagcaatacagaacttaaagca |
39867433 |
T |
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| Q |
120 |
taaaacggcaattaatttggatttggaacagcgacgtgaaagtaattaagcagcaataacaaaagc |
185 |
Q |
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| T |
39867432 |
taaaacgacaattaatttggatttggaacaataacgtgaaagtaattaagcagcagtaacaaaagc |
39867367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 22705005 - 22704854
Alignment:
| Q |
20 |
aatatgaaattgcatcaatatggagcatggaatgaattggaatccagcaattatcacataatcgatggaaaacaaaagaagcaatgcagaacttaaagca |
119 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
22705005 |
aatatggaattgcatcaatatggaacatggaatgaattgga--------------acataaccgatggaaaacaaaagaagcaatacagaacttaaagca |
22704920 |
T |
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| Q |
120 |
taaaacggcaattaatttggatttggaacagcgacgtgaaagtaattaagcagcaataacaaaagc |
185 |
Q |
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||||||| ||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
22704919 |
taaaacgacaattaatttgtattcggagcagaaacgtgaaagtaattaagcagcaataacaaaagc |
22704854 |
T |
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