View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_4 (Length: 463)
Name: NF10188_low_4
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 12513586 - 12513793
Alignment:
| Q |
18 |
gttggagtgcttcagcaacaattctaccaaacatgctttaattgcatgattgacagttaaggatattctcccagcagtttctttgctttccatatgaaag |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12513586 |
gttggagtgcttcagcaacaattctaccagacatgctttaattgcatgattgacaattaaggctattctcccagcagtttctttgctttccatatgaaag |
12513685 |
T |
|
| Q |
118 |
caaaagcataaagagatctatctattaaggaatatttggacgaccaagttcacaaccagtacttaagtgaaggaattggctcatcaatatgcttctactg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12513686 |
caaaagcataaagagatctatctattaaggaatatttggacgaccaagttcacaaccagtacttaagtaaaggaattggctcatcaatatgcttctactg |
12513785 |
T |
|
| Q |
218 |
ctacaatt |
225 |
Q |
| |
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|||||||| |
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|
| T |
12513786 |
ctacaatt |
12513793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 280 - 453
Target Start/End: Original strand, 12513846 - 12514014
Alignment:
| Q |
280 |
acacaaaaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacattttataagtcatattttgcttcttgagggtgatgagttcctt |
379 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12513846 |
acacaacaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacatgttataagtcatattttgcttcttgagggtgatgagttcctt |
12513945 |
T |
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| Q |
380 |
gatataagaatacatgtgaagttgtgtcatcgagtttggcacaaatcttatatttgattatgaaagatcctatg |
453 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
12513946 |
gatataagaatacatgtgaagttgtgtcatcgagtttggcgcaaatc-----tttgattatgaaagatcctatg |
12514014 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 32282902 - 32283106
Alignment:
| Q |
18 |
gttggagtgcttcagcaacaattctaccaaacatgctttaattgcatgattgacagttaaggatattctcccagcagtttctttgctttccatatgaaag |
117 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
32282902 |
gttggagcgcttcaacaacaattctaccagacatgctttaattgcatgattgacagttaaggctattctcccaacagtttctttgctttccatatgaaag |
32283001 |
T |
|
| Q |
118 |
caaaagcataaagagatctatctattaaggaatatttggacgaccaagttcacaaccagtacttaagtgaaggaattggctcatcaatatgcttctactg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
32283002 |
caaaagcataaagagatctatctattaaggaatatttggacgaccaagttcaaaacc---acttaagtgaaggaattggctcatcaatatgcttctattg |
32283098 |
T |
|
| Q |
218 |
ctacaatt |
225 |
Q |
| |
|
|||||||| |
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|
| T |
32283099 |
ctacaatt |
32283106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 280 - 453
Target Start/End: Original strand, 32283161 - 32283334
Alignment:
| Q |
280 |
acacaaaaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacattttataagtcatattttgcttcttgagggtgatgagttcctt |
379 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
32283161 |
acacaacaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacatgttctaagtcatattttgcttcttgagggtgatgagttcctt |
32283260 |
T |
|
| Q |
380 |
gatataagaatacatgtgaagttgtgtcatcgagtttggcacaaatcttatatttgattatgaaagatcctatg |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
32283261 |
gatataagaatacatgtgaagttgtgtcatcgagtttgacacaaatcttatatttgattatgaaagatcctatg |
32283334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 15702137 - 15702341
Alignment:
| Q |
18 |
gttggagtgcttcagcaacaattctaccaaacatgctttaattgcatgattgacagttaaggatattctcccagcagtttctttgctttccatatgaaag |
117 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
15702137 |
gttggagcgcttcaacaacaattctaccagacatgctttaattgcatgattgacagttaaggctattctcccaacagtttctttgctttccatatgaaag |
15702236 |
T |
|
| Q |
118 |
caaaagcataaagagatctatctattaaggaatatttggacgaccaagttcacaaccagtacttaagtgaaggaattggctcatcaatatgcttctactg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
15702237 |
caaaagcataaagagatctatctattaaggaatatttggacgaccaagttcaaaacc---acttaagtgaaggaattggctcatcaatatgcttctattg |
15702333 |
T |
|
| Q |
218 |
ctacaatt |
225 |
Q |
| |
|
|||||||| |
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|
| T |
15702334 |
ctacaatt |
15702341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 280 - 453
Target Start/End: Original strand, 15702396 - 15702569
Alignment:
| Q |
280 |
acacaaaaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacattttataagtcatattttgcttcttgagggtgatgagttcctt |
379 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
15702396 |
acacaacaacgtcattcttttttgaatttttaattcgttggaagttttcatatgacatgttctaagtcatattttgcttcttgagggtgatgagttcctt |
15702495 |
T |
|
| Q |
380 |
gatataagaatacatgtgaagttgtgtcatcgagtttggcacaaatcttatatttgattatgaaagatcctatg |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
15702496 |
gatataagaatacatgtgaagttgtgtcatcgagtttgacacaaatcttatatttgattatgaaagatcctatg |
15702569 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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