View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_5 (Length: 446)
Name: NF10188_low_5
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 7285360 - 7284993
Alignment:
| Q |
13 |
taggctattgaagaattttgaaatcatgtttgcctaatgtgggagtttttaagttttccatgatactatatataatggtgcagagagtagagttttttct |
112 |
Q |
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| T |
7285360 |
taggctattgaagaattttgaaatcatgtttgcctgatgtgggagtttttaagttttccatgatactatatataatggtgcagagagtagagttttttct |
7285261 |
T |
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| Q |
113 |
ttgggaattataatatttatatttaatggggtatagagtttaatgttataaactgatatcattgtgtttggtgttaagttatgtggtctcaatggccaca |
212 |
Q |
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| T |
7285260 |
ttgggaattataatatttatatttaatggggtatagagtttaatgttataaactgatatcattgtgtttggtgttaagttatgtggtctcaatggccaca |
7285161 |
T |
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| Q |
213 |
tgaagcacatcaatgatggccttaaaatcaattctctaggtatttgttttctacatttcttcatcttcaagattctagcttttaatgggttataactcgc |
312 |
Q |
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| T |
7285160 |
tgaagcacatcaatgatggccttaaaatcaattctctaggtatttgttttctacatttcttcatcttcaagattctagcttttaatgggttataactcgc |
7285061 |
T |
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| Q |
313 |
aagttaaattgtgaagatgagtttccatgttgaagtggaggaagccgtaattagagacataaaccctt |
380 |
Q |
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| T |
7285060 |
aagttaaattgtgaagatgagtttccatgttgaagtggaggaagccgtaattagagacataaagcctt |
7284993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 7284944 - 7284891
Alignment:
| Q |
377 |
ccttaattattctttatttagcacttcaaatttttgcataggctcattggttat |
430 |
Q |
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| T |
7284944 |
ccttaattattctttatttagcacttcaaatttccgcataggctcattggttat |
7284891 |
T |
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