View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10188_low_6 (Length: 439)
Name: NF10188_low_6
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_6 |
 | |
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| [»] scaffold0003 (2 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 46 - 422
Target Start/End: Complemental strand, 24495421 - 24495045
Alignment:
| Q |
46 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24495421 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24495322 |
T |
|
| Q |
146 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatacta |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24495321 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatacta |
24495222 |
T |
|
| Q |
246 |
gtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495221 |
gtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatg |
24495122 |
T |
|
| Q |
346 |
acgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttt |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
24495121 |
acgttgcctagacagaggtttggtgaggcaatctgatagatgatctatagtggaaacatgttgaacccgaatctttt |
24495045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 46 - 286
Target Start/End: Complemental strand, 24491863 - 24491623
Alignment:
| Q |
46 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
24491863 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24491764 |
T |
|
| Q |
146 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatacta |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
24491763 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatacta |
24491664 |
T |
|
| Q |
246 |
gtatctcttaatttaaaagccttggtcctgtaaccttaaca |
286 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24491663 |
gtatctcttaatttaaaagccttggtcctgtaaccttaaca |
24491623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 2810371 - 2810226
Alignment:
| Q |
94 |
tcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtga |
193 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2810371 |
tcacaaggtatattggtacaatatatagaaacatatttgttgtcctaataattgcttcctagagctatggtttgactttctctaatcaattacagtgtga |
2810272 |
T |
|
| Q |
194 |
tattatttcttgatcacagaataactctcatcttaaatgcttaata |
239 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| |||||||||||| |
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|
| T |
2810271 |
tattatttcttaatcacagaataactctcgtctaaaatgcttaata |
2810226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 2810071 - 2810031
Alignment:
| Q |
247 |
tatctcttaatttaaaagccttggtcctgtaaccttaacac |
287 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2810071 |
tatctcttaatttaaaagccttggtcttgtaaccttaacac |
2810031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 46 - 422
Target Start/End: Original strand, 18556573 - 18556947
Alignment:
| Q |
46 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
145 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18556573 |
tataaggaataatgatatgtatggaataatgattttt-gctatatcattcacaaggtatattggtacaatatatagaaacatatttgctgtcctaataat |
18556671 |
T |
|
| Q |
146 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatacta |
245 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
18556672 |
tgcttcctccagctatggtttgactttctctagtcaattatagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaatactagaa |
18556771 |
T |
|
| Q |
246 |
gtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
18556772 |
-tatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcatatacgcctatcttgaaacgaagatcttgatg |
18556870 |
T |
|
| Q |
346 |
acgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttt |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18556871 |
acgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttt |
18556947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 46 - 286
Target Start/End: Complemental strand, 24359176 - 24358936
Alignment:
| Q |
46 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
24359176 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24359077 |
T |
|
| Q |
146 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatacta |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
24359076 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatacta |
24358977 |
T |
|
| Q |
246 |
gtatctcttaatttaaaagccttggtcctgtaaccttaaca |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24358976 |
gtatctcttaatttaaaagccttggtcctgtaaccttaaca |
24358936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 45 - 271
Target Start/End: Complemental strand, 86922 - 86693
Alignment:
| Q |
45 |
gtataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataa |
144 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86922 |
gtataaggaataatgatatataaggaataatgattttt-gctatatcattcacaaggtattttggcacaatatatagaaacatatttgctgtcctaataa |
86824 |
T |
|
| Q |
145 |
ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataata-- |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
86823 |
ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaatactaga |
86724 |
T |
|
| Q |
243 |
--ctagtatctcttaatttaaaagccttggt |
271 |
Q |
| |
|
|| |||| |||||||||||||||||||| |
|
|
| T |
86723 |
atataatatcacttaatttaaaagccttggt |
86693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 255 - 422
Target Start/End: Complemental strand, 86677 - 86510
Alignment:
| Q |
255 |
aatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcct |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
86677 |
aatttaaaagccttggtcctgtaaccttaacacgcccctgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcct |
86578 |
T |
|
| Q |
355 |
agacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttt |
422 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
86577 |
agacagaggtttggtgaggcaatctgttagctgatctgtagtggaaacatgttgaacccgaatctttt |
86510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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