View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10188_low_7 (Length: 438)
Name: NF10188_low_7
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 33 - 419
Target Start/End: Complemental strand, 44224219 - 44223833
Alignment:
| Q |
33 |
caaaggctggtggatttggggttactggatctcacctttgatgtatgggcagaatgctttgatggccaatgaatttcttgggcacagttggcacaatgta |
132 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224219 |
caaaggctggtggatttggggttactggatctcacctttgatgtatgggcagaatgctttgatggccaatgaatttcttgggcacagttggcacaatgta |
44224120 |
T |
|
| Q |
133 |
attaattacttgagcttgcttgcaacttcataattcatctacttttgtttgagaaatttgcaagcctaatttattttatatacttaattataggctactg |
232 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224119 |
attaattacttgagcttgcttgcaacttcataattcatctacttttgtttgagaaatttgcaagcctaatttattttatatacttaattataggctactg |
44224020 |
T |
|
| Q |
233 |
ctgatttgggaaaagattatctcgatacccgagggttcttcccacatgcatattggtattggataggcgttgggggattggttggatttgtctttctttt |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224019 |
ctgatttgggaaaagattatctcgatacccgagggttcttcccacatgcatattggtattggataggcgttgggggattggttggatttgtctttctttt |
44223920 |
T |
|
| Q |
333 |
caacgtggcgtttggtgtggctctcgctgtactaggcccatttgataagcctagtgcaacaataactgaagattcagaagatgattc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44223919 |
caacgtggcgtttggtgtggctctcgctgtactaggcccatttgataagcctagtgcaacaataactgaagattcagaagatgattc |
44223833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 33 - 419
Target Start/End: Complemental strand, 44235033 - 44234648
Alignment:
| Q |
33 |
caaaggctggtggatttggggttactggatctcacctttgatgtatgggcagaatgctttgatggccaatgaatttcttgggcacagttggcacaatgta |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44235033 |
caaaggctggtggatttggggttactggatctcacctttgatgtatgggcagaatgctttgatggccaatgaatttcttgggaacagttggcacaatgta |
44234934 |
T |
|
| Q |
133 |
attaattacttgagcttgcttgcaacttcataattcatctacttttgtttgagaaatttgcaagcctaatttattttatatacttaattataggctactg |
232 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
44234933 |
atta----cttgagcttgcttgcaactttataattcatctacttttgtttgagaaatttacaagcctgatttattttatatacttaattataggctactt |
44234838 |
T |
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| Q |
233 |
ctgatttgggaaaagattatctcgatacccgagggttcttcccacatgcatattggtattggataggcgttgggggattggttggatttgtctttctttt |
332 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
44234837 |
ttgatttgggaaaaaattatctcgatacccgagggttcttcccacatgcatattggtattggataggcgttgggggattggttggatttgtgttcctttt |
44234738 |
T |
|
| Q |
333 |
caacgtggcgtttggtgtggctctcgctgtactaggcccatttgataagcctagtgcaacaataactg---aagattcagaagatgattc |
419 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44234737 |
caacgcggcatttggtgtggctctcgctgtactaggcccatttgataagcctagtgcaacaataactgaagaagattcagaagatgattc |
44234648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 33 - 419
Target Start/End: Complemental strand, 44212053 - 44211670
Alignment:
| Q |
33 |
caaaggctggtggatttggggttactggatctcacctttgatgtatgggcagaatgctttgatggccaatgaatttcttgggcacagttggcacaatgta |
132 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
44212053 |
caaaagctggtggatttggggttattggatctcacctatgatgtacgggcagaatgctttgatggccaatgaatttcttgcgaacagttggcacaatgta |
44211954 |
T |
|
| Q |
133 |
attaattacttgagcttgcttgcaacttcataattcatctacttttgtttgagaaatttgcaagcctaatttattttatatacttaa-ttataggctact |
231 |
Q |
| |
|
||| |||||||||||| ||||| | |||||||||||| ||||| ||||||||||| |||| || ||||||||||||||||||| |||||||||||| |
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|
| T |
44211953 |
attt----cttgagcttgctggcaaccttataattcatctatttttggttgagaaatttacaagtctgatttattttatatacttaaattataggctact |
44211858 |
T |
|
| Q |
232 |
gctgatttgggaaaagattatctcgatacccgagggttcttcccacatgcatattggtattggataggcgttgggggattggttggatttgtctttcttt |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| |
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|
| T |
44211857 |
tctgatttgggaaaagattatctcgatacccgagggttcttcccacatgcatattggtattggataggcgttgggggattggctggatttgtgttccttt |
44211758 |
T |
|
| Q |
332 |
tcaacgtggcgtttggtgtggctctcgctgtactaggcccatttgataagcctagtgcaacaataactgaagattcagaagatgattc |
419 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44211757 |
tcaacgcggcgtttggtgtggctctcgctgtactaggcccatttgataagcctagtgcaacaataactgataattcagaagatgattc |
44211670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 2885889 - 2885984
Alignment:
| Q |
40 |
tggtggatttggggttactggatctcacctttgatgtatgggcagaatgctttgatggccaatgaatttcttgggcacagttggcacaatgtaatt |
135 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || |||||| | |||| |||||||| ||||| | |||||| || |||||||| |
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|
| T |
2885889 |
tggtggatttggggttactggatttcacctttgatgtatggacaaaatgctataatggtgaatgaattccttggagatagttggaaccatgtaatt |
2885984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 2875853 - 2875951
Alignment:
| Q |
37 |
ggctggtggatttggggttactggatctcacctttgatgtatgggcagaatgctttgatggccaatgaatttcttgggcacagttggcacaatgtaatt |
135 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||| || |||||| | |||| |||||||| ||||| |||||||| |||| |||||| |
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|
| T |
2875853 |
ggctggtggatttggggttactggatatcacctttaatgtatgcacaaaatgctataatggtgaatgaattccttggaaacagttggaacaaagtaatt |
2875951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 2898538 - 2898436
Alignment:
| Q |
33 |
caaaggctggtggatttggggttactggatctcacctttgatgtatgggcagaatgctttgatggccaatgaatttcttgggcacagttggcacaatgta |
132 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| |||||||| || |||||| | |||| |||||||| ||||| | |||||| || ||||| |
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|
| T |
2898538 |
caaaagctggtggatttggggttactggatttcacctttaatgtatggacaaaatgctataatggtgaatgaattccttggagatagttggaaccatgta |
2898439 |
T |
|
| Q |
133 |
att |
135 |
Q |
| |
|
||| |
|
|
| T |
2898438 |
att |
2898436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 2876083 - 2876120
Alignment:
| Q |
268 |
ttcttcccacatgcatattggtattggataggcgttgg |
305 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
2876083 |
ttcttcacacatgcatattggtattggataggagttgg |
2876120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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