View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10188_low_9 (Length: 420)
Name: NF10188_low_9
Description: NF10188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10188_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 19402601 - 19402992
Alignment:
| Q |
17 |
catgatgaagattctgtacaacttcaacagctcttttgtgttaaaatagcaaatttggttctaaaataagaagtaaacatgcaaaaaacacaactgttat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19402601 |
catgatgaagattctgtacaacttcaacagctcttttgtgttaaaatagcaaatttggttctaaaataagaagtaaacatgcaaaaaacacaactgttat |
19402700 |
T |
|
| Q |
117 |
cacttatcacagagtttaaccaattgtatttatgtctttgaattatagtatctgctgttacagtgcattttgaattattgtaattggtttgtgttacagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19402701 |
cacttatcacagagtttaaccaattgtatttacgtctttgaattatagtatctgctgttacagtgcattttgaattattgtaattggtttgtgttacagt |
19402800 |
T |
|
| Q |
217 |
gcattttcaaataatccttactttttaacatggtacatttggtgcatgaaataatcacagttttctcttcaagaattatgggaaatatttggcacactat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19402801 |
gcattttcaaataatccttactttttaacatggtacatttggtgcatgaaataatcacagttttctcttcaagaattatgggaaatatttggcacactat |
19402900 |
T |
|
| Q |
317 |
acctcttcaagaattgaatgtcaaacgatagggccgtgcctacatgtttgacaacaagtattcgctatttctttttagtatgcactgattct |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19402901 |
acctcttcaagaattgaatgtcaaacgatagggccgtgcctacatgtttgacaacaagtattcgcaatttctttttagtatgcactgattct |
19402992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 19378082 - 19378135
Alignment:
| Q |
53 |
tgtgttaaaatagcaaatttggttctaaaataagaagtaaacatgcaaaaaaca |
106 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19378082 |
tgtgttaaaatagaaaatttggtttcaaaataagaagtaaacatgcaaaaaaca |
19378135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 19458478 - 19458575
Alignment:
| Q |
54 |
gtgttaaaatagcaaatttggttctaaaataagaagtaaacatgcaaaaaacacaactgttatcacttatcacagagtttaaccaattgtatttatgtct |
153 |
Q |
| |
|
|||||||||||| |||||||||| || |||||||||||| |||||||||||| | |||| | || |||||||||||| ||||||||||| |||| |
|
|
| T |
19458478 |
gtgttaaaatagaaaatttggtttcaatataagaagtaaatatgcaaaaaacagagctgt------tgataacagagtttaacaaattgtatttacgtct |
19458571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 111
Target Start/End: Original strand, 19353276 - 19353307
Alignment:
| Q |
80 |
aaataagaagtaaacatgcaaaaaacacaact |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
19353276 |
aaataagaagtaaacatgcaaaaaacacaact |
19353307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University